Click here to switch to the map view.

The map label for this gene is ychE [C]

Identifier: 110633752

GI number: 110633752

Start: 1494560

End: 1495213

Strand: Reverse

Name: ychE [C]

Synonym: Meso_1399

Alternate gene names: 110633752

Gene position: 1495213-1494560 (Counterclockwise)

Preceding gene: 110633760

Following gene: 110633749

Centisome position: 33.89

GC content: 62.23

Gene sequence:

>654_bases
ATGCAGATTCGAAAGATGCCCATGCCGCCCTACGACGCCATCCTGAATGCTTTCACCACACTGCTTGTGACGGTTGATCC
GCCGGGTCTGGCACCCTTGTTCCTGGCACTGACGGCTGGCATGAACCGCCAGGAACGCCATCAAGTCGCGATCCGCGCGT
GCCTGATCTCCCTTGGCGTGCTGGTGTTGTTCGCGCTGGCGGGAAGCTCGATCCTCTCCGTCCTCGGCATCACGATCCCG
GCTTTCCGCGTCGCCGGCGGGATGCTTCTTTTTGTTATCGCCTTCGAAATGATCTTCGAACGCCGGCAGCAGCGCCACAA
GAGGAGCGCCGAACGCGCGATCACGCGCGATATGATCCACAACATCGCCGCCTTTCCGTTGGCGATCCCGCTCACCGCCG
GGCCGGGCGCGATCTCGGCCACGCTCCTTCTTTCCGGCACCGCCTCGGCCCCTGGCGCGCGGCTGGTGATGGTCGCGATC
CTGCTGGTGGTCATCCTGATCACCTATCTCGTCTTCGTGCTGGCCGAGCGCATCGATCGGTTTTTGGGCGAAACGGGACG
GTCGATTTTGACCCGCCTTCTGGGCTTACTTCTGTCCGCACTTGCGGTGCAGTTCGTGGCTGATGGCGCCAGGGAACTTA
TTCAGAACGGCTAG

Upstream 100 bases:

>100_bases
CTTTATCAAAGGACTTGCCCAACATTCCGCATCGCGCTGCACCGCGCCGCCGGACGAGAAACAGAGCTGTTCAATCCAGC
GATGAACGGCTCTAATTTGA

Downstream 100 bases:

>100_bases
ATTTAGCCGGACAGAGACGCGGCGCGTCTGCCCCTTATGAGAGATGTGAGAAGATAAGAGGCTCAACTGGCCTAGCTTTC
GCTTGGGCGGGCATGAAAGG

Product: multiple antibiotic resistance (MarC)-related proteins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MQIRKMPMPPYDAILNAFTTLLVTVDPPGLAPLFLALTAGMNRQERHQVAIRACLISLGVLVLFALAGSSILSVLGITIP
AFRVAGGMLLFVIAFEMIFERRQQRHKRSAERAITRDMIHNIAAFPLAIPLTAGPGAISATLLLSGTASAPGARLVMVAI
LLVVILITYLVFVLAERIDRFLGETGRSILTRLLGLLLSALAVQFVADGARELIQNG

Sequences:

>Translated_217_residues
MQIRKMPMPPYDAILNAFTTLLVTVDPPGLAPLFLALTAGMNRQERHQVAIRACLISLGVLVLFALAGSSILSVLGITIP
AFRVAGGMLLFVIAFEMIFERRQQRHKRSAERAITRDMIHNIAAFPLAIPLTAGPGAISATLLLSGTASAPGARLVMVAI
LLVVILITYLVFVLAERIDRFLGETGRSILTRLLGLLLSALAVQFVADGARELIQNG
>Mature_217_residues
MQIRKMPMPPYDAILNAFTTLLVTVDPPGLAPLFLALTAGMNRQERHQVAIRACLISLGVLVLFALAGSSILSVLGITIP
AFRVAGGMLLFVIAFEMIFERRQQRHKRSAERAITRDMIHNIAAFPLAIPLTAGPGAISATLLLSGTASAPGARLVMVAI
LLVVILITYLVFVLAERIDRFLGETGRSILTRLLGLLLSALAVQFVADGARELIQNG

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=200, Percent_Identity=35.5, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787809, Length=215, Percent_Identity=30.2325581395349, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789842, Length=205, Percent_Identity=31.7073170731707, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 23321; Mature: 23321

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIRKMPMPPYDAILNAFTTLLVTVDPPGLAPLFLALTAGMNRQERHQVAIRACLISLGV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVLFALAGSSILSVLGITIPAFRVAGGMLLFVIAFEMIFERRQQRHKRSAERAITRDMIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIAAFPLAIPLTAGPGAISATLLLSGTASAPGARLVMVAILLVVILITYLVFVLAERIDR
HHHHHHHHEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGETGRSILTRLLGLLLSALAVQFVADGARELIQNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIRKMPMPPYDAILNAFTTLLVTVDPPGLAPLFLALTAGMNRQERHQVAIRACLISLGV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LVLFALAGSSILSVLGITIPAFRVAGGMLLFVIAFEMIFERRQQRHKRSAERAITRDMIH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIAAFPLAIPLTAGPGAISATLLLSGTASAPGARLVMVAILLVVILITYLVFVLAERIDR
HHHHHHHHEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGETGRSILTRLLGLLLSALAVQFVADGARELIQNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]