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The map label for this gene is psd

Identifier: 110633332

GI number: 110633332

Start: 1074565

End: 1075260

Strand: Direct

Name: psd

Synonym: Meso_0978

Alternate gene names: 110633332

Gene position: 1074565-1075260 (Clockwise)

Preceding gene: 110633330

Following gene: 110633333

Centisome position: 24.35

GC content: 60.34

Gene sequence:

>696_bases
ATGAGCCTAGCTGACACAATCCGAAGCAGTTTGGTGCCGATCCACCGGGAGGGGTATCGCTTCATTGCCGCTTTTGGGAT
CGGCTCGGTAATCCTTGGGCTTTTATGGGAGCCGCTTTTTTGGATCGGCTTGCTGCTAACCGCCTGGTGCGCCTATTTCT
TCCGCGATCCGCAGCGCATTACCCCGGTCGACGATCGGCTGGTGATCGCACCGGCTGACGGGATCGTCTCCTCGGTCGGG
CCTGCGCTGCCGCCGCCTGAGCTGGGGCTTTCCGGAGAGTTCACGCGGGTTTCCGTTTTCATGAACGTCTTTTCCTGCCA
CATCAATCGTGCACCGGTGCGTGGCCGCATTTCGCTGATAGAGCATCGGCCGGGCAAGTTCCTCAATGCTGATCTCGACA
AGGCGAGCATGGAGAACGAACGCAACAGCCTCATAATCGAAAGCCCGTATGGTCCCGTGGCAGTGGTGCAGATCGCCGGT
CTCATTGCACGCCGCATTGTCTGCTGGGCGGAGGCGCCGGGAGAAATTTCCGTCGGCGAGCGCTTCGGACTTATCCGCTT
TGGATCGCGTGTCGACGTCTACCTGCCCAGGGAAGCACGCCCGCGTGTAGCAGTGGGGCAGGTCTCCGTGGGCGGCGAGA
CAATCATCGCCGAATTCGGCAGCAACGCACCTCCTCCTCTGGTAAGAGTTTCCTGA

Upstream 100 bases:

>100_bases
GATCACAATTTATTACATCACCCGATCGGGGTCCGCGTTGCAGGAGGCCGCCCTTTCCGATAGGAAGCCCACATTTGATC
TGCCGGGGATGCGGACGACC

Downstream 100 bases:

>100_bases
TGTCGGGTCCTTTTCCTCCCTTCGAGCCTCATGGCGGAGGCGGACGCCGCATCCGTGAAATCCCGCTGCGCCTGATGGTC
CCGAACTTGATCACAGTGCT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSLADTIRSSLVPIHREGYRFIAAFGIGSVILGLLWEPLFWIGLLLTAWCAYFFRDPQRITPVDDRLVIAPADGIVSSVG
PALPPPELGLSGEFTRVSVFMNVFSCHINRAPVRGRISLIEHRPGKFLNADLDKASMENERNSLIIESPYGPVAVVQIAG
LIARRIVCWAEAPGEISVGERFGLIRFGSRVDVYLPREARPRVAVGQVSVGGETIIAEFGSNAPPPLVRVS

Sequences:

>Translated_231_residues
MSLADTIRSSLVPIHREGYRFIAAFGIGSVILGLLWEPLFWIGLLLTAWCAYFFRDPQRITPVDDRLVIAPADGIVSSVG
PALPPPELGLSGEFTRVSVFMNVFSCHINRAPVRGRISLIEHRPGKFLNADLDKASMENERNSLIIESPYGPVAVVQIAG
LIARRIVCWAEAPGEISVGERFGLIRFGSRVDVYLPREARPRVAVGQVSVGGETIIAEFGSNAPPPLVRVS
>Mature_230_residues
SLADTIRSSLVPIHREGYRFIAAFGIGSVILGLLWEPLFWIGLLLTAWCAYFFRDPQRITPVDDRLVIAPADGIVSSVGP
ALPPPELGLSGEFTRVSVFMNVFSCHINRAPVRGRISLIEHRPGKFLNADLDKASMENERNSLIIESPYGPVAVVQIAGL
IARRIVCWAEAPGEISVGERFGLIRFGSRVDVYLPREARPRVAVGQVSVGGETIIAEFGSNAPPPLVRVS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_MESSB (Q11JQ0)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673540.1
- STRING:   Q11JQ0
- GeneID:   4179770
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_0978
- NMPDR:   fig|266779.1.peg.3949
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   MSP266779:MESO_0978-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25201; Mature: 25069

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLADTIRSSLVPIHREGYRFIAAFGIGSVILGLLWEPLFWIGLLLTAWCAYFFRDPQRI
CCHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVDDRLVIAPADGIVSSVGPALPPPELGLSGEFTRVSVFMNVFSCHINRAPVRGRISLI
CCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
EHRPGKFLNADLDKASMENERNSLIIESPYGPVAVVQIAGLIARRIVCWAEAPGEISVGE
ECCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCEECCC
RFGLIRFGSRVDVYLPREARPRVAVGQVSVGGETIIAEFGSNAPPPLVRVS
EECEEEECCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEC
>Mature Secondary Structure 
SLADTIRSSLVPIHREGYRFIAAFGIGSVILGLLWEPLFWIGLLLTAWCAYFFRDPQRI
CHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVDDRLVIAPADGIVSSVGPALPPPELGLSGEFTRVSVFMNVFSCHINRAPVRGRISLI
CCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
EHRPGKFLNADLDKASMENERNSLIIESPYGPVAVVQIAGLIARRIVCWAEAPGEISVGE
ECCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCEECCC
RFGLIRFGSRVDVYLPREARPRVAVGQVSVGGETIIAEFGSNAPPPLVRVS
EECEEEECCEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA