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The map label for this gene is ygaU [C]

Identifier: 110633326

GI number: 110633326

Start: 1067694

End: 1069334

Strand: Direct

Name: ygaU [C]

Synonym: Meso_0972

Alternate gene names: 110633326

Gene position: 1067694-1069334 (Clockwise)

Preceding gene: 110633324

Following gene: 110633328

Centisome position: 24.2

GC content: 65.57

Gene sequence:

>1641_bases
ATGGTTCTCACTCCGCTTAAAGCGTTGCTTGTCATCGCGGGAGTCTTGGTCGCCGGGGGTCTCGTTTATTTCACCGGCAT
TTTCAATTCGCAGACCGAGCAATCGCAGGCGGTGGTGGATTCTCACGCCCCCACAGAGGCTGCGGAAGGCGCAACCGCAA
CAGGTGGCGAGCCTGGCGATGCTCCGATCGTGGCCGAGGCGGGCGACCAGCGGGCCGCCACCGACGAGCAGGTGATCGTT
CCTGCCTTCGATCTCCTGCGCGTTGAGCCTGACGGCTCGCTCGTGATTGCCGGCAGGGCCGTTGCCGGGGCCGAAGTGGA
AATCGTCAGCGGCTCCTCCTTGCTTGCCAAGACGACCGCCGGTCCCACCGGGGATTTCGCGGCGGTCCTCGACAAGCCGT
TAAAACCCGGCGAGCACAATATCGTGCTGCGTGCCACGTCGAAGGACAATGTGGCCGCGACGTCCCTTGAAACCGCGATC
GTTTCTGTTCCCACCGCGGAGAATGGCCAGGTGGTCGCTCTCGTCCAGCAGCCGGGCGAGCCCAGCCGGCTAATCACAAC
GCCTGAGGCTGAGGCGCCGCCGTCTGGCGAGACCGCGGGATTGGACGAGCGGCAGAAGGATGCGCCAGCTTCAGGCCAGG
ACGGAGCGGTGCAGGCCGGCGGTGCCACGCAATCGATGGGGCCGGAAAGCGGTGCCGGCAGCATCCCCCAGTCTTCCGAG
ATCGCGGAGGCCAAGCCGGGCGAGACATCCGGCTCGCATGCCAGCGGGGAGGCTGCCCAGGAAGGCCCGGCTCAGGCGGA
AATGCCGTCTGACACGCCGAACAAGGACGAGCCCTTCATCGAAGCGGTGGAGATCGACGGGCGGAACGTTTTTGTTGCCG
GGCGGGCGGCGCCCGGGCGCACGATGCGCATTTATGCCAATGACATCCTGCTCGGTCAGGCCACCGTATCGCCGGAGGGT
CGTTTCCTGATTGAGGCCGAGCGCGATTTGCCGGTGGGGGACTATATTATTCGAGCGGATGTGCTCGCGGACGATGAAGG
TACGGTAATCGCGCGGGCGGCGGTACCGTTTGAGCGCCATGAAGGCGAAAAAATCGCCGCGGTGGCGCCTCGGTCGCTGG
CGCAGACGCCCCCCGCGCAGGGAGCTTCCCATGCCGGAGAGACGCGGCAGGATGCCCGCGCGGCGGGTGAGGGACTGCCG
GACGGCGCCACCCGCCCGGACGCTCGCGAGCTGGCGGAAACTGGGCCAAACGCCGGCAACGGCAACATGTCCCGGTCCGG
CGCTGTTGAAGATCGACTGGGTGACCGGGTCGCGTCGGCCGGGGGAAACGAATTGCGATCCGATGACCGCAATCTCGGTC
GGGATTCCTCTGAAGTCACTTCGCCGCCTCTTGAGCCGGTGGGCGGCTCCGTCATCATTCGGCGCGGTGATACGCTCTGG
CAAATCTCGCGCCGTATCTATGGACGCGGCATCCGCTACACCACGATCTATCTGGCCAACCAGAGCCAGATCCGGGATCC
GGACCGGATTTGGCCCGGCCAGGTTTTCACCGTCCCCAATCAGACGCGGGAGGGGGAGCGGGCGGATATGGATGCTGCCG
GTGCCGAGGAGCAAAGGGATTATTCAACGAGTTCTCGCTGA

Upstream 100 bases:

>100_bases
AGCAACAAAGCCGGGTGAATGCCGGGACTTCAAGGGACCTCGCCTTGTCCTTGGCTGCAAAAAGAGATAGACCGGCTGGT
AACGACAAAGAGTTTGAAAC

Downstream 100 bases:

>100_bases
TCGAACACGACAAAGCCGATGTCCCTTGTCGGTGTGAAGTTGTCCCGCTCGACCTTGAACGTTGTTGTTCCCGTTTTCCT
GACCCCGTCTATGCAAAGCG

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MVLTPLKALLVIAGVLVAGGLVYFTGIFNSQTEQSQAVVDSHAPTEAAEGATATGGEPGDAPIVAEAGDQRAATDEQVIV
PAFDLLRVEPDGSLVIAGRAVAGAEVEIVSGSSLLAKTTAGPTGDFAAVLDKPLKPGEHNIVLRATSKDNVAATSLETAI
VSVPTAENGQVVALVQQPGEPSRLITTPEAEAPPSGETAGLDERQKDAPASGQDGAVQAGGATQSMGPESGAGSIPQSSE
IAEAKPGETSGSHASGEAAQEGPAQAEMPSDTPNKDEPFIEAVEIDGRNVFVAGRAAPGRTMRIYANDILLGQATVSPEG
RFLIEAERDLPVGDYIIRADVLADDEGTVIARAAVPFERHEGEKIAAVAPRSLAQTPPAQGASHAGETRQDARAAGEGLP
DGATRPDARELAETGPNAGNGNMSRSGAVEDRLGDRVASAGGNELRSDDRNLGRDSSEVTSPPLEPVGGSVIIRRGDTLW
QISRRIYGRGIRYTTIYLANQSQIRDPDRIWPGQVFTVPNQTREGERADMDAAGAEEQRDYSTSSR

Sequences:

>Translated_546_residues
MVLTPLKALLVIAGVLVAGGLVYFTGIFNSQTEQSQAVVDSHAPTEAAEGATATGGEPGDAPIVAEAGDQRAATDEQVIV
PAFDLLRVEPDGSLVIAGRAVAGAEVEIVSGSSLLAKTTAGPTGDFAAVLDKPLKPGEHNIVLRATSKDNVAATSLETAI
VSVPTAENGQVVALVQQPGEPSRLITTPEAEAPPSGETAGLDERQKDAPASGQDGAVQAGGATQSMGPESGAGSIPQSSE
IAEAKPGETSGSHASGEAAQEGPAQAEMPSDTPNKDEPFIEAVEIDGRNVFVAGRAAPGRTMRIYANDILLGQATVSPEG
RFLIEAERDLPVGDYIIRADVLADDEGTVIARAAVPFERHEGEKIAAVAPRSLAQTPPAQGASHAGETRQDARAAGEGLP
DGATRPDARELAETGPNAGNGNMSRSGAVEDRLGDRVASAGGNELRSDDRNLGRDSSEVTSPPLEPVGGSVIIRRGDTLW
QISRRIYGRGIRYTTIYLANQSQIRDPDRIWPGQVFTVPNQTREGERADMDAAGAEEQRDYSTSSR
>Mature_546_residues
MVLTPLKALLVIAGVLVAGGLVYFTGIFNSQTEQSQAVVDSHAPTEAAEGATATGGEPGDAPIVAEAGDQRAATDEQVIV
PAFDLLRVEPDGSLVIAGRAVAGAEVEIVSGSSLLAKTTAGPTGDFAAVLDKPLKPGEHNIVLRATSKDNVAATSLETAI
VSVPTAENGQVVALVQQPGEPSRLITTPEAEAPPSGETAGLDERQKDAPASGQDGAVQAGGATQSMGPESGAGSIPQSSE
IAEAKPGETSGSHASGEAAQEGPAQAEMPSDTPNKDEPFIEAVEIDGRNVFVAGRAAPGRTMRIYANDILLGQATVSPEG
RFLIEAERDLPVGDYIIRADVLADDEGTVIARAAVPFERHEGEKIAAVAPRSLAQTPPAQGASHAGETRQDARAAGEGLP
DGATRPDARELAETGPNAGNGNMSRSGAVEDRLGDRVASAGGNELRSDDRNLGRDSSEVTSPPLEPVGGSVIIRRGDTLW
QISRRIYGRGIRYTTIYLANQSQIRDPDRIWPGQVFTVPNQTREGERADMDAAGAEEQRDYSTSSR

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56515; Mature: 56515

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLTPLKALLVIAGVLVAGGLVYFTGIFNSQTEQSQAVVDSHAPTEAAEGATATGGEPGD
CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCC
APIVAEAGDQRAATDEQVIVPAFDLLRVEPDGSLVIAGRAVAGAEVEIVSGSSLLAKTTA
CCEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECEECCCEEEEECCCCEEEECCC
GPTGDFAAVLDKPLKPGEHNIVLRATSKDNVAATSLETAIVSVPTAENGQVVALVQQPGE
CCCCCHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHCEEEEECCCCCCCCEEEEEECCCC
PSRLITTPEAEAPPSGETAGLDERQKDAPASGQDGAVQAGGATQSMGPESGAGSIPQSSE
CCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
IAEAKPGETSGSHASGEAAQEGPAQAEMPSDTPNKDEPFIEAVEIDGRNVFVAGRAAPGR
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
TMRIYANDILLGQATVSPEGRFLIEAERDLPVGDYIIRADVLADDEGTVIARAAVPFERH
EEEEEECEEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCHHHC
EGEKIAAVAPRSLAQTPPAQGASHAGETRQDARAAGEGLPDGATRPDARELAETGPNAGN
CCCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC
GNMSRSGAVEDRLGDRVASAGGNELRSDDRNLGRDSSEVTSPPLEPVGGSVIIRRGDTLW
CCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHCCCCCHHCCCCCCCCCCCEEEEECCCHHH
QISRRIYGRGIRYTTIYLANQSQIRDPDRIWPGQVFTVPNQTREGERADMDAAGAEEQRD
HHHHHHHCCCCEEEEEEEECCHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHC
YSTSSR
CCCCCC
>Mature Secondary Structure
MVLTPLKALLVIAGVLVAGGLVYFTGIFNSQTEQSQAVVDSHAPTEAAEGATATGGEPGD
CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCC
APIVAEAGDQRAATDEQVIVPAFDLLRVEPDGSLVIAGRAVAGAEVEIVSGSSLLAKTTA
CCEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECEECCCEEEEECCCCEEEECCC
GPTGDFAAVLDKPLKPGEHNIVLRATSKDNVAATSLETAIVSVPTAENGQVVALVQQPGE
CCCCCHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHCEEEEECCCCCCCCEEEEEECCCC
PSRLITTPEAEAPPSGETAGLDERQKDAPASGQDGAVQAGGATQSMGPESGAGSIPQSSE
CCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
IAEAKPGETSGSHASGEAAQEGPAQAEMPSDTPNKDEPFIEAVEIDGRNVFVAGRAAPGR
CCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
TMRIYANDILLGQATVSPEGRFLIEAERDLPVGDYIIRADVLADDEGTVIARAAVPFERH
EEEEEECEEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCHHHC
EGEKIAAVAPRSLAQTPPAQGASHAGETRQDARAAGEGLPDGATRPDARELAETGPNAGN
CCCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCC
GNMSRSGAVEDRLGDRVASAGGNELRSDDRNLGRDSSEVTSPPLEPVGGSVIIRRGDTLW
CCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHCCCCCHHCCCCCCCCCCCEEEEECCCHHH
QISRRIYGRGIRYTTIYLANQSQIRDPDRIWPGQVFTVPNQTREGERADMDAAGAEEQRD
HHHHHHHCCCCEEEEEEEECCHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHC
YSTSSR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA