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The map label for this gene is rarD [H]

Identifier: 110633324

GI number: 110633324

Start: 1066030

End: 1066950

Strand: Direct

Name: rarD [H]

Synonym: Meso_0970

Alternate gene names: 110633324

Gene position: 1066030-1066950 (Clockwise)

Preceding gene: 110633323

Following gene: 110633326

Centisome position: 24.16

GC content: 58.63

Gene sequence:

>921_bases
ATGACCGAGACAGTGGCAGTTCCACCGCCAAGCAAGGGCGACTCTGCCCAAGGTTTTCTGTTTGCCTTTTCGGCATATTT
CTTATGGGGCCTGCTTCCCATCTTTCTCAAGATGGTTGCGCATATTCCGCCTATGGAAGTGGTTGCGCATCGCGTTGTAT
GGTCCGTGCCGATCGCGGCCGTGGTGCTGCTCCTCCTTGGCCGCACCGCCGATGTCCGCAAGGCTCTCCGCTCGCCGCGG
ACCTTGTTGCTGGCCGCTTTGACCGCTTCGCTCATTACAGCCAATTGGGGCCTTTATGTCTGGGCAATTGCAACAGACCG
TGCGCTCGACACCGCCCTCGGTTATTACATCAACCCGCTTGTTTCCATCGCCATGGCGGCGGTGTTCCTGGGCGAGAAAT
TCACCCGGCTGCAGCTCGCCGCAGTTGCGCTTGCGACTGCTGCGGTGGCGGTGCTGACAATCGAAAGCGGCGGATTGCCA
TGGCTATCGCTGATGATCGCCATGACATTTGCTGTCTACGGCTTCCTTAGAAAGACCCTGCCAATCGGCCCGAGCCAGGG
TTTCTTCCTCGAAGTGCTCATTCTCAGCGTGCCGGCTCTTGCCTATATCGCCTGGCTGCAATGGACGGGGCAGGGACACT
TCGGCCTCGGGCAGCCGGAGAATATGGTGCTGCTTCTGGCCTGCGGGCCCGTAACCGCATGCCCATTCCTTCTATACGCC
TTTGGCGCCAAGGCTTTGCGCTACGCGACGATCGGCATCATGCAGTATATCGCGCCAAGCATGGTTTTCATTACGGCCGT
TTTCATTTTCAAGGAGCCTTTCAGCCGCGTCCAGGCCTTCACCTTCGCCCTCATCTGGATCGCGCTGGCGCTTTACACCT
GGCCGATGCTCCGTGGGGCAAAGGTCAAAGCCGTTCAATAA

Upstream 100 bases:

>100_bases
TCCGACAACATCATCGATGCGTCCTTTCAAGCGCTGATGGATTCCATTGTCTATAAGCTGGTGAAGAACCGGGAAAGGAC
CGGCCTCGCGGCCGAATGAC

Downstream 100 bases:

>100_bases
TCGCGGGGTCACCCTCGGAAGGGGAGCCGGTGCCCATAAGTGCCGGCACGATTTCGTCCACGTGATCGATGACGAGCGGT
TTCACGCGGTGTCCGGTATG

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTETVAVPPPSKGDSAQGFLFAFSAYFLWGLLPIFLKMVAHIPPMEVVAHRVVWSVPIAAVVLLLLGRTADVRKALRSPR
TLLLAALTASLITANWGLYVWAIATDRALDTALGYYINPLVSIAMAAVFLGEKFTRLQLAAVALATAAVAVLTIESGGLP
WLSLMIAMTFAVYGFLRKTLPIGPSQGFFLEVLILSVPALAYIAWLQWTGQGHFGLGQPENMVLLLACGPVTACPFLLYA
FGAKALRYATIGIMQYIAPSMVFITAVFIFKEPFSRVQAFTFALIWIALALYTWPMLRGAKVKAVQ

Sequences:

>Translated_306_residues
MTETVAVPPPSKGDSAQGFLFAFSAYFLWGLLPIFLKMVAHIPPMEVVAHRVVWSVPIAAVVLLLLGRTADVRKALRSPR
TLLLAALTASLITANWGLYVWAIATDRALDTALGYYINPLVSIAMAAVFLGEKFTRLQLAAVALATAAVAVLTIESGGLP
WLSLMIAMTFAVYGFLRKTLPIGPSQGFFLEVLILSVPALAYIAWLQWTGQGHFGLGQPENMVLLLACGPVTACPFLLYA
FGAKALRYATIGIMQYIAPSMVFITAVFIFKEPFSRVQAFTFALIWIALALYTWPMLRGAKVKAVQ
>Mature_305_residues
TETVAVPPPSKGDSAQGFLFAFSAYFLWGLLPIFLKMVAHIPPMEVVAHRVVWSVPIAAVVLLLLGRTADVRKALRSPRT
LLLAALTASLITANWGLYVWAIATDRALDTALGYYINPLVSIAMAAVFLGEKFTRLQLAAVALATAAVAVLTIESGGLPW
LSLMIAMTFAVYGFLRKTLPIGPSQGFFLEVLILSVPALAYIAWLQWTGQGHFGLGQPENMVLLLACGPVTACPFLLYAF
GAKALRYATIGIMQYIAPSMVFITAVFIFKEPFSRVQAFTFALIWIALALYTWPMLRGAKVKAVQ

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=279, Percent_Identity=35.4838709677419, Blast_Score=187, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33229; Mature: 33098

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETVAVPPPSKGDSAQGFLFAFSAYFLWGLLPIFLKMVAHIPPMEVVAHRVVWSVPIAA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVLLLLGRTADVRKALRSPRTLLLAALTASLITANWGLYVWAIATDRALDTALGYYINPL
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
VSIAMAAVFLGEKFTRLQLAAVALATAAVAVLTIESGGLPWLSLMIAMTFAVYGFLRKTL
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHC
PIGPSQGFFLEVLILSVPALAYIAWLQWTGQGHFGLGQPENMVLLLACGPVTACPFLLYA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
FGAKALRYATIGIMQYIAPSMVFITAVFIFKEPFSRVQAFTFALIWIALALYTWPMLRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVKAVQ
EEECCC
>Mature Secondary Structure 
TETVAVPPPSKGDSAQGFLFAFSAYFLWGLLPIFLKMVAHIPPMEVVAHRVVWSVPIAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VVLLLLGRTADVRKALRSPRTLLLAALTASLITANWGLYVWAIATDRALDTALGYYINPL
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHH
VSIAMAAVFLGEKFTRLQLAAVALATAAVAVLTIESGGLPWLSLMIAMTFAVYGFLRKTL
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHC
PIGPSQGFFLEVLILSVPALAYIAWLQWTGQGHFGLGQPENMVLLLACGPVTACPFLLYA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
FGAKALRYATIGIMQYIAPSMVFITAVFIFKEPFSRVQAFTFALIWIALALYTWPMLRGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVKAVQ
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA