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The map label for this gene is ccmH [H]

Identifier: 110633254

GI number: 110633254

Start: 990699

End: 991160

Strand: Direct

Name: ccmH [H]

Synonym: Meso_0900

Alternate gene names: 110633254

Gene position: 990699-991160 (Clockwise)

Preceding gene: 110633253

Following gene: 110633255

Centisome position: 22.45

GC content: 58.87

Gene sequence:

>462_bases
ATGATCTTTCGCGCATTTCTGCTTGTGCTCTGCCTGTTGGGATTTTCGGGCATCGCTGTTGCGGTGCAGCCTGATGAGAT
ACTTGTGGACCCTGCGCTCGAAGCGAGGGCGCGGCAGCTTTCAGCTGAGCTGCGCTGCATGGTCTGCCAGAACCAATCGA
TCGACGATTCCGACGCGGAGCTGGCGCGAGATCTCCGCGTTCTCGTGCGTGAGCGGCTCAAGGCCGGCGATACCAATGAA
GAAGTTCTGAATTATATTGTCTCTCGCTATGGCGAGTTCGTGCTCTTGAAGCCGCGCTTCAATGCGCGCAACGCCATTCT
CTGGGCAGCGCCGGTCCTCATCCTTGTTGGTGGGAGCGCACTTGCCTTCTCGGTTCTTCGGCGGCGCGGCAACACCGTTC
CCGCTCCTCTCTCGACGGAGGAGGAAGCTGCCTTGCGGGACATTCTTAAGGATGAGAGCTGA

Upstream 100 bases:

>100_bases
TGATGGGCGGCGGCTTCATCTCTCTCATGGACCGCAGGCTGCGCGTCGGTGCGCCGGCAAGGCGCAAAGCAGCGCTCGCG
GCGGACGGTGGGGGAACGCG

Downstream 100 bases:

>100_bases
AAAGTTCGGGCAATCCGCAGCACCTCAAAACGCATGGCGCGGATGGGCCGGTCTTGACGGCTTCAGAATGGCCGCCGGAA
ACATTACAAAAGTTTCATGC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MIFRAFLLVLCLLGFSGIAVAVQPDEILVDPALEARARQLSAELRCMVCQNQSIDDSDAELARDLRVLVRERLKAGDTNE
EVLNYIVSRYGEFVLLKPRFNARNAILWAAPVLILVGGSALAFSVLRRRGNTVPAPLSTEEEAALRDILKDES

Sequences:

>Translated_153_residues
MIFRAFLLVLCLLGFSGIAVAVQPDEILVDPALEARARQLSAELRCMVCQNQSIDDSDAELARDLRVLVRERLKAGDTNE
EVLNYIVSRYGEFVLLKPRFNARNAILWAAPVLILVGGSALAFSVLRRRGNTVPAPLSTEEEAALRDILKDES
>Mature_153_residues
MIFRAFLLVLCLLGFSGIAVAVQPDEILVDPALEARARQLSAELRCMVCQNQSIDDSDAELARDLRVLVRERLKAGDTNE
EVLNYIVSRYGEFVLLKPRFNARNAILWAAPVLILVGGSALAFSVLRRRGNTVPAPLSTEEEAALRDILKDES

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=114, Percent_Identity=42.1052631578947, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16924; Mature: 16924

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFRAFLLVLCLLGFSGIAVAVQPDEILVDPALEARARQLSAELRCMVCQNQSIDDSDAE
CHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LARDLRVLVRERLKAGDTNEEVLNYIVSRYGEFVLLKPRFNARNAILWAAPVLILVGGSA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCHH
LAFSVLRRRGNTVPAPLSTEEEAALRDILKDES
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIFRAFLLVLCLLGFSGIAVAVQPDEILVDPALEARARQLSAELRCMVCQNQSIDDSDAE
CHHHHHHHHHHHHCCCCEEEEECCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LARDLRVLVRERLKAGDTNEEVLNYIVSRYGEFVLLKPRFNARNAILWAAPVLILVGGSA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCHH
LAFSVLRRRGNTVPAPLSTEEEAALRDILKDES
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]