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The map label for this gene is bbuR [H]

Identifier: 110633155

GI number: 110633155

Start: 886607

End: 887524

Strand: Reverse

Name: bbuR [H]

Synonym: Meso_0798

Alternate gene names: 110633155

Gene position: 887524-886607 (Counterclockwise)

Preceding gene: 110633158

Following gene: 110633154

Centisome position: 20.11

GC content: 59.91

Gene sequence:

>918_bases
ATGGAGCTTCGCTCGTTGCGCTATTTCGTTTATATCGCCGAAGCACGGAGCTTCTCGCAAGCCGCGGTGCACCTGCGTAT
TGCACAGCCCGCCCTAAGCCGGCAGGTCTCAAAGATGGAGGCGGAGCTTGGTGTCCAGCTGTTCGTGCGCACAGGACGGC
GGCTGGAACTCACTGATGCCGGACGAAGATTGCTCGTGCGCGCTCATTCATTGCTGCGGCAAGCATCGGCCACGGTCGAG
GAGGTGCGGACCTATGGCTCCGGACTGAGCGGCACCATCGCAGTCGGGGTCAGCCCAGCGACATGCGAGGCCGTAGCGCC
GGTCCTGCTGCGGGAATGCGCAGCGCGATACCCCCAGATGAAGCTGCGCTTCGTGGAAGGCTTCAGCAGCCTTGTTCTCG
ACCAGCTTCTCAATCAGGAGCTGAACTTGTGCATTCTGCACAATCCATCCGAGCACAAGGCCCTGGACATCACTCCCCTG
GAACCGGAATCGATGTACCTGGTAGGCCCCCCCAAGGACTCTGAGGGGCTGCCACCGGTAGACGAAGAAACTCAGCTGGA
GGGATTGCCTATCATTCTGCCAAGGGCTCCGCACGGTCTGCGGTTCGCATTGGAACAGTCTCGGCTTGGGCGGCAACTCA
ATGTGGCCCTGGAGGTCGACGGATTGATCACCACCAAGGCCCTGATTGAGGCAGGAGGAGGGTATACGATTCTCCCGTAT
AGCGCGATCTTCCGCCAGGTAAGAGCCGGACAACTCACGGCGCAGCGGCTTCAAAATATTGAAATCGCCTGGCGCATGTG
CCTGGTCTCCCATGTGGAGACGCAGGCGACGCGCAGCGTGCAGGTGCTGGCAGAGATCGTAAAGAACGGCATCCGCAAGA
TGGTCGATTCTTCACAGACGTTTTCGACCGAAAGCTGA

Upstream 100 bases:

>100_bases
CCTGCCTTGCAGGGGAAGAAGTAGCTTTTGCGCCCCTATTCGTCTAAGATATAAGAGGTATTCCTACTATGCTTTTGAGG
CATAGGTAGAGGGAGGATGC

Downstream 100 bases:

>100_bases
ATGATCGCATTGCACCCTAAACCGTTTTTCGTCTTCGCTACTACTTCCGTCTTAACTGATATACTATAGGAGTAGAGCAT
CCTAACGATGCACGTCAACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MELRSLRYFVYIAEARSFSQAAVHLRIAQPALSRQVSKMEAELGVQLFVRTGRRLELTDAGRRLLVRAHSLLRQASATVE
EVRTYGSGLSGTIAVGVSPATCEAVAPVLLRECAARYPQMKLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPL
EPESMYLVGPPKDSEGLPPVDEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVALEVDGLITTKALIEAGGGYTILPY
SAIFRQVRAGQLTAQRLQNIEIAWRMCLVSHVETQATRSVQVLAEIVKNGIRKMVDSSQTFSTES

Sequences:

>Translated_305_residues
MELRSLRYFVYIAEARSFSQAAVHLRIAQPALSRQVSKMEAELGVQLFVRTGRRLELTDAGRRLLVRAHSLLRQASATVE
EVRTYGSGLSGTIAVGVSPATCEAVAPVLLRECAARYPQMKLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPL
EPESMYLVGPPKDSEGLPPVDEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVALEVDGLITTKALIEAGGGYTILPY
SAIFRQVRAGQLTAQRLQNIEIAWRMCLVSHVETQATRSVQVLAEIVKNGIRKMVDSSQTFSTES
>Mature_305_residues
MELRSLRYFVYIAEARSFSQAAVHLRIAQPALSRQVSKMEAELGVQLFVRTGRRLELTDAGRRLLVRAHSLLRQASATVE
EVRTYGSGLSGTIAVGVSPATCEAVAPVLLRECAARYPQMKLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPL
EPESMYLVGPPKDSEGLPPVDEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVALEVDGLITTKALIEAGGGYTILPY
SAIFRQVRAGQLTAQRLQNIEIAWRMCLVSHVETQATRSVQVLAEIVKNGIRKMVDSSQTFSTES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=240, Percent_Identity=32.9166666666667, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=32.2448979591837, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=30.1587301587302, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787806, Length=275, Percent_Identity=29.8181818181818, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=33.9393939393939, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=26.7489711934156, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=27.0588235294118, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=156, Percent_Identity=28.8461538461538, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790208, Length=149, Percent_Identity=30.2013422818792, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI2367136, Length=172, Percent_Identity=29.6511627906977, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=26.027397260274, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=27.1255060728745, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788626, Length=158, Percent_Identity=31.0126582278481, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082132, Length=256, Percent_Identity=25, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787589, Length=259, Percent_Identity=25.8687258687259, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788706, Length=133, Percent_Identity=29.3233082706767, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=306, Percent_Identity=24.5098039215686, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33680; Mature: 33680

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRSLRYFVYIAEARSFSQAAVHLRIAQPALSRQVSKMEAELGVQLFVRTGRRLELTDA
CCCCCEEEEEEEECCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHEEECCCCEEEECHH
GRRLLVRAHSLLRQASATVEEVRTYGSGLSGTIAVGVSPATCEAVAPVLLRECAARYPQM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHH
KLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPLEPESMYLVGPPKDSEGLPPV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEECCCCCCCCCCCC
DEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVALEVDGLITTKALIEAGGGYTILPY
CCCCCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCEEEECH
SAIFRQVRAGQLTAQRLQNIEIAWRMCLVSHVETQATRSVQVLAEIVKNGIRKMVDSSQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FSTES
CCCCC
>Mature Secondary Structure
MELRSLRYFVYIAEARSFSQAAVHLRIAQPALSRQVSKMEAELGVQLFVRTGRRLELTDA
CCCCCEEEEEEEECCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHEEECCCCEEEECHH
GRRLLVRAHSLLRQASATVEEVRTYGSGLSGTIAVGVSPATCEAVAPVLLRECAARYPQM
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHH
KLRFVEGFSSLVLDQLLNQELNLCILHNPSEHKALDITPLEPESMYLVGPPKDSEGLPPV
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEECCCCCCCCCCCC
DEETQLEGLPIILPRAPHGLRFALEQSRLGRQLNVALEVDGLITTKALIEAGGGYTILPY
CCCCCCCCCCEEECCCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCCCEEEECH
SAIFRQVRAGQLTAQRLQNIEIAWRMCLVSHVETQATRSVQVLAEIVKNGIRKMVDSSQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FSTES
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9524276; 12910271 [H]