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The map label for this gene is yciR [C]

Identifier: 110632976

GI number: 110632976

Start: 694804

End: 696528

Strand: Reverse

Name: yciR [C]

Synonym: Meso_0619

Alternate gene names: 110632976

Gene position: 696528-694804 (Counterclockwise)

Preceding gene: 110632979

Following gene: 110632975

Centisome position: 15.79

GC content: 59.54

Gene sequence:

>1725_bases
ATGGGCCCCTCCCTCGAAGCGCTTTACCAGGTACTTACTGCCATTCCCTATCCGGTCTTCGTGAAAGACGAGAACCACAG
GTGGGTTCTCGTCAATCAGGCGTTCTGCGAGATAATGGGGCATACGCGCGAGGAACTGCTCTACAAGACAGACTACGACT
TCGTCCCCGCCGCACAAGCCGACGTTTTCCGGGCCATCGATGATCATGTATTCGCCACTGGTGAGCCAAACGAAAACGAG
GAGGTTCTAACCGACGCATCAGGAACAGTGCGCGTGATCACAACGCGCAAGTGCCGCGTCGAACTCCCCACGCCAGACGG
TCCGCGACCGTTCATCGTCGCCATCTTCTCAGATATCACAGCTTATCGGGAAGCCGAGGCCCGCGCGCGTTACCATGCCC
ATCACGATTCGCTCACGGGTCTTGCCAACCGCATGCATCTTGGCGAACGGCTGCAGGAAGAGCTTATCGAAGCCCGCGCG
AAGGGTACCCAACTGGCGTTATTCCTGCTGGACCTGGACGGGTTCAAGCAAGTCAACGACCGGTATGGGCATGCTGCGGG
GGACGAACTGCTGCAAATCATCGCCACTCGCCTGAAACGGATAGTGCGCGGGCGCGATGTGGTGGCCCGGCTCGGGGGCG
ACGAATTTTGCGTGGTTCAGGTGGAACCGGATGATTCCAGCGCGGTCGATGCACTTGCCGAGCGCATATTGGGAGTCTTG
TCCGAACCAATTGTAGCAGAATGGGGAACTGCACGTGTCACCGCGTCCATCGGCATCTCGGCGTTTCCGGGAGATGCGGT
GACGCAGGAGGACCTGCTTCGCTATGCCGACATTGCTCTTTACAGTGTGAAAGGATCGGGCCGTGCCTCCTACGCCCGAT
ATGACAAGCAGAAGGACGGGGTGTCCAATTCCATCGGCAGCCTGGCGCCCGCACTTGAAGCGGCAATTGCCAATGAGGAG
ATAACCCTCGCTTTCCAGCCTCTGGTTTCGACCCTGGACGGCACCCCGCGGGCCTTCGAAGCCTTGGCCCGCTGGCACCA
CCCGGAACTCGGCGCGATACCGCCTGGCGTCTTTATTCCTCTTGCCGAGAGAAAGGGGTTGATGCCGGCCCTGGGCCGCC
TTGTGCTGCGGCAGGCGTGTGATGCGGCTGCAAAATGGGACTCCGATCTCCAGGTGCGGGTCAACATTTCGCCGGTTCAG
GTGGAAAGCGGAGATCTGGTGGAGGTGATCAGGGATGTTCTCAAGGAAACCCGGCTGCCTGCTCAAAGGCTCGAGATCGA
AGTTACTGAAGCCGTCTTACTGAATGAGAAAAGCGAGAACCTGCACATCTTTCATCGACTGAAGATGCTGGGGATCAAAA
TCGCGCTCGACGATTTCGGTTCCGGCTGGACCTCCCTCGACGTGCTGCGGCGCTTCCCGTTCGACCGGCTGAAAATCGAC
CGGAGCTTTGTCGCGAACATGGAAACCGATCCGCGCGCAGCCGCCGTCGTCAGAGCTGTTCTCAGCATCGGCAAAGCGCT
GGACCTGCCTATCACGGCGGAAGGTGTCGAGCGGCGAGAGCAGCTGGACGTCCTCAGGACAATGGGGTGCGACGAAGTAC
AGGGGCATTTCCTGGGCCGTCCAAAGAACATCCGTGGCAATGGCCCTGTGGACGAGGCCGAAAAATGCGCCGAGACCAAG
GAGGAACTCCGTGAGGCCAATGAAGCTGGCGCTGCTTTAGGGTGA

Upstream 100 bases:

>100_bases
CTAACGGGCCTAATGGCGATCCTGCGTTTCATCAGCAAATATCGAGAGAGATCGTCAAGTCGAATGCGGCCGGAAAATCG
ACCGCGTGTTGGAGCAGATA

Downstream 100 bases:

>100_bases
TAGCTGAAGCCTCAGCCTGCATCGCCTGGGCAGGCCGCCGAAGCCGCCGTCTTCGCTGACAATCCGAGAGGTCTAGTACT
CCAGCAAGGAAGGCTAGGCC

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MGPSLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFVPAAQADVFRAIDDHVFATGEPNENE
EVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDITAYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARA
KGTQLALFLLDLDGFKQVNDRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGVL
SEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKDGVSNSIGSLAPALEAAIANEE
ITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFIPLAERKGLMPALGRLVLRQACDAAAKWDSDLQVRVNISPVQ
VESGDLVEVIRDVLKETRLPAQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPFDRLKID
RSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQGHFLGRPKNIRGNGPVDEAEKCAETK
EELREANEAGAALG

Sequences:

>Translated_574_residues
MGPSLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFVPAAQADVFRAIDDHVFATGEPNENE
EVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDITAYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARA
KGTQLALFLLDLDGFKQVNDRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGVL
SEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKDGVSNSIGSLAPALEAAIANEE
ITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFIPLAERKGLMPALGRLVLRQACDAAAKWDSDLQVRVNISPVQ
VESGDLVEVIRDVLKETRLPAQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPFDRLKID
RSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQGHFLGRPKNIRGNGPVDEAEKCAETK
EELREANEAGAALG
>Mature_573_residues
GPSLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFVPAAQADVFRAIDDHVFATGEPNENEE
VLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDITAYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARAK
GTQLALFLLDLDGFKQVNDRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGVLS
EPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKDGVSNSIGSLAPALEAAIANEEI
TLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFIPLAERKGLMPALGRLVLRQACDAAAKWDSDLQVRVNISPVQV
ESGDLVEVIRDVLKETRLPAQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPFDRLKIDR
SFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQGHFLGRPKNIRGNGPVDEAEKCAETKE
ELREANEAGAALG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=34.1013824884793, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=31.5909090909091, Blast_Score=219, Evalue=5e-58,
Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=27.3607748184019, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=36.2869198312236, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788502, Length=234, Percent_Identity=35.8974358974359, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=30.4878048780488, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788381, Length=444, Percent_Identity=27.2522522522523, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=31.0344827586207, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=31.1203319502075, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=29.4372294372294, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790496, Length=233, Percent_Identity=29.1845493562232, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=203, Percent_Identity=33.9901477832512, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=32.4324324324324, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082096, Length=211, Percent_Identity=27.4881516587678, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=35.3293413173653, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1788849, Length=194, Percent_Identity=28.8659793814433, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=35.8381502890173, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.9281437125749, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=34.3558282208589, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787802, Length=198, Percent_Identity=33.8383838383838, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=35.3658536585366, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787410, Length=227, Percent_Identity=25.5506607929515, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=35.9477124183007, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=101, Percent_Identity=37.6237623762376, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=173, Percent_Identity=32.3699421965318, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63244; Mature: 63112

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPSLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFVPAAQA
CCCCHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHHEECCCCCCCCCHH
DVFRAIDDHVFATGEPNENEEVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDIT
HHHHHHHCCEEECCCCCCCCCEEECCCCEEEEEEECEEEEECCCCCCCCCEEEEEHHHHH
AYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARAKGTQLALFLLDLDGFKQVND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
RYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGVL
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
SEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKDG
CCCHHHCCCCEEEEEECCCEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHCCHHCC
VSNSIGSLAPALEAAIANEEITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFIP
CHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LAERKGLMPALGRLVLRQACDAAAKWDSDLQVRVNISPVQVESGDLVEVIRDVLKETRLP
CHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHCCC
AQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPFDRLKID
HHHHEEEEEHHHEECCCCCCHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHHHC
RSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQGHFLGR
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
PKNIRGNGPVDEAEKCAETKEELREANEAGAALG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GPSLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFVPAAQA
CCCHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHHEECCCCCCCCCHH
DVFRAIDDHVFATGEPNENEEVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDIT
HHHHHHHCCEEECCCCCCCCCEEECCCCEEEEEEECEEEEECCCCCCCCCEEEEEHHHHH
AYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEARAKGTQLALFLLDLDGFKQVND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
RYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGVL
HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
SEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKDG
CCCHHHCCCCEEEEEECCCEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHCCHHCC
VSNSIGSLAPALEAAIANEEITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFIP
CHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCEEE
LAERKGLMPALGRLVLRQACDAAAKWDSDLQVRVNISPVQVESGDLVEVIRDVLKETRLP
CHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHCCC
AQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPFDRLKID
HHHHEEEEEHHHEECCCCCCHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHHHC
RSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQGHFLGR
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
PKNIRGNGPVDEAEKCAETKEELREANEAGAALG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]