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The map label for this gene is oppB [H]

Identifier: 110632399

GI number: 110632399

Start: 44979

End: 45902

Strand: Reverse

Name: oppB [H]

Synonym: Meso_0037

Alternate gene names: 110632399

Gene position: 45902-44979 (Counterclockwise)

Preceding gene: 110632400

Following gene: 110632398

Centisome position: 1.04

GC content: 62.12

Gene sequence:

>924_bases
ATGCTTGCCTATGTTTTGCGGCGCCTATTCGGCGCGATCCCGACGCTATTTGTCATCATCACGCTATCGTTCTTCCTGAT
GCGCATCGCGCCGGGCGGTCCATTCGACCGCGAGCGCGCGCTCGAAGCGAAAGTGCTGGAAAACCTGAACCGCGTCTTCC
ATCTCGATCGCCCCCTGTGGGAGCAATATCTTTACTATCTTGGCAACCTTGCGCGCGGCGACCTGGGACCGAGCTTCATC
TACCGCGATTTCTCCGTGCAGCAGCTGCTCGGCAGCGGACTGCCGATCTCGATTCAGCTCGGCGCAAGTGCGCTATTGCT
GGCGCTCCTGATTGGTTCGGTGCTTGGCACGATTGCGGCGCTGCGCCAGAACTCCTGGATCGACTACGGTGTGACGGCAG
TCGCCACCTTCGGCATCACCGTACCGAATTTCGTGGTGGCGCCCCTCTTGTCGCTGATCTTTGGCGTGTGGCTCAGCCTG
CTGCCGGCGGGCGGCTGGGGCAATGGCGGTCCCGCCAACATGCTCCTGCCGGTGATCACGCTGGCTCTCCCGCAAGTGGC
GATCATTGCTCGCCTTATCCGCGGCTCGATGATCGAGGCGCTGCGCTCCGATCACGTCCGCACTGCGCGCGCCTATGGCC
TGCCGGCGAGAATGGTTGTGATCGTCCACGCGATGCGCGCCGCCTGCCTGCCGGTGGTCTCCTATCTCGGCCCCGCCGCG
GCTGCTCTTTTGACCGGCTCGGTTGTGGTGGAGACCATATTCGGACTTCCGGGCATCGGCCGCTATTTCGTGCAGGGCGC
GCTCAATCGCGACTACACGCTGGTGATGGGAACCGTGATCATCATTGCCGTCTTCGTTGTGGTCTTCAATCTGATCGTCG
ATCTGCTTTACGCCGCCTTGGATCCGAGGGTGCGCTATGACTGA

Upstream 100 bases:

>100_bases
GCTCACGCCACGCGCTGGATGAGCATTTCCGAATAGTTCCTGCGTCCGCGGGGCCGCGCAGAAAAGCGCGCGGCTCCGGG
ACCCGACGAGAGCAACGGCG

Downstream 100 bases:

>100_bases
TATCGCAACCAACACGCCCGAGCTTGCCGCCGGCACAGCGGTAAAGGGGCGATCCCTCTGGGCGACAGCGCTGATGCGGC
TACGCCGCAACAAGGCTGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MLAYVLRRLFGAIPTLFVIITLSFFLMRIAPGGPFDRERALEAKVLENLNRVFHLDRPLWEQYLYYLGNLARGDLGPSFI
YRDFSVQQLLGSGLPISIQLGASALLLALLIGSVLGTIAALRQNSWIDYGVTAVATFGITVPNFVVAPLLSLIFGVWLSL
LPAGGWGNGGPANMLLPVITLALPQVAIIARLIRGSMIEALRSDHVRTARAYGLPARMVVIVHAMRAACLPVVSYLGPAA
AALLTGSVVVETIFGLPGIGRYFVQGALNRDYTLVMGTVIIIAVFVVVFNLIVDLLYAALDPRVRYD

Sequences:

>Translated_307_residues
MLAYVLRRLFGAIPTLFVIITLSFFLMRIAPGGPFDRERALEAKVLENLNRVFHLDRPLWEQYLYYLGNLARGDLGPSFI
YRDFSVQQLLGSGLPISIQLGASALLLALLIGSVLGTIAALRQNSWIDYGVTAVATFGITVPNFVVAPLLSLIFGVWLSL
LPAGGWGNGGPANMLLPVITLALPQVAIIARLIRGSMIEALRSDHVRTARAYGLPARMVVIVHAMRAACLPVVSYLGPAA
AALLTGSVVVETIFGLPGIGRYFVQGALNRDYTLVMGTVIIIAVFVVVFNLIVDLLYAALDPRVRYD
>Mature_307_residues
MLAYVLRRLFGAIPTLFVIITLSFFLMRIAPGGPFDRERALEAKVLENLNRVFHLDRPLWEQYLYYLGNLARGDLGPSFI
YRDFSVQQLLGSGLPISIQLGASALLLALLIGSVLGTIAALRQNSWIDYGVTAVATFGITVPNFVVAPLLSLIFGVWLSL
LPAGGWGNGGPANMLLPVITLALPQVAIIARLIRGSMIEALRSDHVRTARAYGLPARMVVIVHAMRAACLPVVSYLGPAA
AALLTGSVVVETIFGLPGIGRYFVQGALNRDYTLVMGTVIIIAVFVVVFNLIVDLLYAALDPRVRYD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=52.6143790849673, Blast_Score=340, Evalue=7e-95,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=34.5132743362832, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1787053, Length=309, Percent_Identity=35.5987055016181, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=36.7741935483871, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=28.5714285714286, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=34.7560975609756, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33263; Mature: 33263

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYVLRRLFGAIPTLFVIITLSFFLMRIAPGGPFDRERALEAKVLENLNRVFHLDRPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
EQYLYYLGNLARGDLGPSFIYRDFSVQQLLGSGLPISIQLGASALLLALLIGSVLGTIAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LRQNSWIDYGVTAVATFGITVPNFVVAPLLSLIFGVWLSLLPAGGWGNGGPANMLLPVIT
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LALPQVAIIARLIRGSMIEALRSDHVRTARAYGLPARMVVIVHAMRAACLPVVSYLGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALLTGSVVVETIFGLPGIGRYFVQGALNRDYTLVMGTVIIIAVFVVVFNLIVDLLYAAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPRVRYD
CCCCCCC
>Mature Secondary Structure
MLAYVLRRLFGAIPTLFVIITLSFFLMRIAPGGPFDRERALEAKVLENLNRVFHLDRPLW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
EQYLYYLGNLARGDLGPSFIYRDFSVQQLLGSGLPISIQLGASALLLALLIGSVLGTIAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHH
LRQNSWIDYGVTAVATFGITVPNFVVAPLLSLIFGVWLSLLPAGGWGNGGPANMLLPVIT
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LALPQVAIIARLIRGSMIEALRSDHVRTARAYGLPARMVVIVHAMRAACLPVVSYLGPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALLTGSVVVETIFGLPGIGRYFVQGALNRDYTLVMGTVIIIAVFVVVFNLIVDLLYAAL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPRVRYD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]