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The map label for this gene is lig [H]

Identifier: 110632393

GI number: 110632393

Start: 37302

End: 38306

Strand: Direct

Name: lig [H]

Synonym: Meso_0031

Alternate gene names: 110632393

Gene position: 37302-38306 (Clockwise)

Preceding gene: 110632389

Following gene: 110632394

Centisome position: 0.85

GC content: 65.27

Gene sequence:

>1005_bases
ATGGCTCCGCTTCTTCGCTCCCAACCGCAAGGCCTCTGCTGTCCCGAGGGAGGCTTTTTTATCGATCCGGTGAGACCGGT
AGAGCGCGCGCTGATCACTCACGGCCATTCCGACCACGCGCGGGCGGGCCACGGCGCGGTGCTTGCCACCCGAGAGACGC
TGGACATCATGGCGCTGCGCTATGGTCCGGGCTTCGCCGGCTCCACGCAGGAGATAGGGCTAGGCGAGACCGTGACGATC
GGCGGCGTGGCGGTGACCTTCCACCCAGCCGGCCACGTGTTGGGCTCGGCGCAGATCTGCGTGGAGGCCAACGGCACGCG
CATCGTAGCCTCCGGCGATTACAAGCGAAGCCCCGATCCCACCTGCGCTTCCTTCGAGCCTATCCCCTGCGACATCTTTA
TTACCGAAGCCACCTTCGCGCTGCCGGTCTTCACCCATCCGCAGGCATCGCACGAGATCGGGCATTTGCTGAAATCGGTC
AGGCAATTTCCCGAGCGTACGCACATCGTAGGTGCCTATACGCTGGGCAAGGCGCAACGCGTGATCGCGCTGCTGCGCGA
GGCAGGATACAACGAACCCATCTACATTCACGGCGCGCTTTCCAAGCTCTGCGGATATTACGAGAGTGCCGGCGTGCCGC
TCGGCATTCTGGAGCCTGCGACGATGGAAGAGCGCGGCGCGGCACCCCCCGCGGGCTCGATTGTCGTGGCGCCTCCGGCC
GCGATCGACGACCGCTGGTCTCGCCGCTTCGCCGATCCGCTCGCCTGTTTCGCCTCCGGCTGGATGCGCATCCGCCAGCG
CGTGCGCCAGAGGGGAGTGGAACTGCCGCTCATCATCTCCGACCATGCCGACTGGGAAGAGCTGACGCAGACGATCCGCG
AAACGGGCGCCGGCGAGGTATGGGTGACGCATGGTCGCGAGGAGGCGCTTGTTCGCTGGTGCGAGATCAATGGCATCGCG
GCGAAACCCTTGCATCTTGCGGGCTACGAGGACGAGACGGAATAG

Upstream 100 bases:

>100_bases
CATGCAGAGGGGTTCCGGGAGGAAGCGCGCGGCTTATGCTGGAGAAATGCGGCATTTGCAAGCGCCTTTTGTTCGGCGCA
AAAACGCCTATCTTCACGGC

Downstream 100 bases:

>100_bases
TGGAACGCTTCGCCGAACTCCTCGACCGGCTGGTGCTGACGCCATCGCGAAACGGCAAGCTGCGGCTCCTGACCGACTAT
TTCGCAACCGTGCCCGACCC

Product: putative mRNA 3-end processing factor

Products: NA

Alternate protein names: Polydeoxyribonucleotide synthase [ATP] [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MAPLLRSQPQGLCCPEGGFFIDPVRPVERALITHGHSDHARAGHGAVLATRETLDIMALRYGPGFAGSTQEIGLGETVTI
GGVAVTFHPAGHVLGSAQICVEANGTRIVASGDYKRSPDPTCASFEPIPCDIFITEATFALPVFTHPQASHEIGHLLKSV
RQFPERTHIVGAYTLGKAQRVIALLREAGYNEPIYIHGALSKLCGYYESAGVPLGILEPATMEERGAAPPAGSIVVAPPA
AIDDRWSRRFADPLACFASGWMRIRQRVRQRGVELPLIISDHADWEELTQTIRETGAGEVWVTHGREEALVRWCEINGIA
AKPLHLAGYEDETE

Sequences:

>Translated_334_residues
MAPLLRSQPQGLCCPEGGFFIDPVRPVERALITHGHSDHARAGHGAVLATRETLDIMALRYGPGFAGSTQEIGLGETVTI
GGVAVTFHPAGHVLGSAQICVEANGTRIVASGDYKRSPDPTCASFEPIPCDIFITEATFALPVFTHPQASHEIGHLLKSV
RQFPERTHIVGAYTLGKAQRVIALLREAGYNEPIYIHGALSKLCGYYESAGVPLGILEPATMEERGAAPPAGSIVVAPPA
AIDDRWSRRFADPLACFASGWMRIRQRVRQRGVELPLIISDHADWEELTQTIRETGAGEVWVTHGREEALVRWCEINGIA
AKPLHLAGYEDETE
>Mature_333_residues
APLLRSQPQGLCCPEGGFFIDPVRPVERALITHGHSDHARAGHGAVLATRETLDIMALRYGPGFAGSTQEIGLGETVTIG
GVAVTFHPAGHVLGSAQICVEANGTRIVASGDYKRSPDPTCASFEPIPCDIFITEATFALPVFTHPQASHEIGHLLKSVR
QFPERTHIVGAYTLGKAQRVIALLREAGYNEPIYIHGALSKLCGYYESAGVPLGILEPATMEERGAAPPAGSIVVAPPAA
IDDRWSRRFADPLACFASGWMRIRQRVRQRGVELPLIISDHADWEELTQTIRETGAGEVWVTHGREEALVRWCEINGIAA
KPLHLAGYEDETE

Specific function: DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair [H]

COG id: COG1236

COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATP- dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000977
- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR016059
- InterPro:   IPR012308
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR011108 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF04675 DNA_ligase_A_N; PF07521 RMMBL [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 36135; Mature: 36003

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLLRSQPQGLCCPEGGFFIDPVRPVERALITHGHSDHARAGHGAVLATRETLDIMALR
CCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEEE
YGPGFAGSTQEIGLGETVTIGGVAVTFHPAGHVLGSAQICVEANGTRIVASGDYKRSPDP
ECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCC
TCASFEPIPCDIFITEATFALPVFTHPQASHEIGHLLKSVRQFPERTHIVGAYTLGKAQR
CCCCCCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHCCHHHEEEEEEEHHHHHH
VIALLREAGYNEPIYIHGALSKLCGYYESAGVPLGILEPATMEERGAAPPAGSIVVAPPA
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCCCCCCEEECCCC
AIDDRWSRRFADPLACFASGWMRIRQRVRQRGVELPLIISDHADWEELTQTIRETGAGEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCE
WVTHGREEALVRWCEINGIAAKPLHLAGYEDETE
EEECCCHHHHEEEEECCCEECCCEEECCCCCCCC
>Mature Secondary Structure 
APLLRSQPQGLCCPEGGFFIDPVRPVERALITHGHSDHARAGHGAVLATRETLDIMALR
CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEEE
YGPGFAGSTQEIGLGETVTIGGVAVTFHPAGHVLGSAQICVEANGTRIVASGDYKRSPDP
ECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCC
TCASFEPIPCDIFITEATFALPVFTHPQASHEIGHLLKSVRQFPERTHIVGAYTLGKAQR
CCCCCCCCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHCCHHHEEEEEEEHHHHHH
VIALLREAGYNEPIYIHGALSKLCGYYESAGVPLGILEPATMEERGAAPPAGSIVVAPPA
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCEEECCCCCHHHCCCCCCCCCEEECCCC
AIDDRWSRRFADPLACFASGWMRIRQRVRQRGVELPLIISDHADWEELTQTIRETGAGEV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCE
WVTHGREEALVRWCEINGIAAKPLHLAGYEDETE
EEECCCHHHHEEEEECCCEECCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA