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The map label for this gene is 109948211

Identifier: 109948211

GI number: 109948211

Start: 1519076

End: 1519528

Strand: Reverse

Name: 109948211

Synonym: Hac_1744

Alternate gene names: NA

Gene position: 1519528-1519076 (Counterclockwise)

Preceding gene: 109948212

Following gene: 109948210

Centisome position: 97.79

GC content: 37.97

Gene sequence:

>453_bases
ATGCAAGTGGAATTTTTGAACGAATACTTTATGTGGATCAAGGCTTTTCATGTGATAGCGGTTATTTCGTGGATGGCAGC
GTTATTTTATTTGCCACGGCTTTTTGTCTATCATGCAGAAAACACCCATAAAAAAGAGTTTGTGGAAGTGGTTAAAATCC
AAGAAAAAAAGCTTTATTCCTTTATCGCTTCACCGGCGATGGGTTTCACGCTCATTACAGGGATTTTAATGCTACTAATC
GCCCCTGAAATCTTTAAAAGTGGGGGGTGGTTGCATGCGAAATTGTCCTTAGTGGCGTTGCTTTTAATCTATCATTTTTA
TTGCAAAAAATGCATGCGCGATTTAGAGAAAGACCCCACGCAAAAAAGCGGGAAGTTTTATCGTATGTTTAATGAAATAC
CCACGATTTTAATGATACTCATTGTGATTTTAGTGGTTGTCAAGCCCTTTTAA

Upstream 100 bases:

>100_bases
ACAAGAAGAATTTTTCAAGCCAAAGCGTGGAAGTGGAAATCACCGGTGCAAGGGAAAATTTGCAAGCGTTTCTAAAACAA
AATAACACCAATTAGGGAGA

Downstream 100 bases:

>100_bases
AGACTGATCATGAAAAAAGAAAAGCATCTCAAGCAAGAAAAAATCATCAACATGTTTGATGATATAGCTAGCTCTTATGA
TCAAGCGAATCGCTTGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MQVEFLNEYFMWIKAFHVIAVISWMAALFYLPRLFVYHAENTHKKEFVEVVKIQEKKLYSFIASPAMGFTLITGILMLLI
APEIFKSGGWLHAKLSLVALLLIYHFYCKKCMRDLEKDPTQKSGKFYRMFNEIPTILMILIVILVVVKPF

Sequences:

>Translated_150_residues
MQVEFLNEYFMWIKAFHVIAVISWMAALFYLPRLFVYHAENTHKKEFVEVVKIQEKKLYSFIASPAMGFTLITGILMLLI
APEIFKSGGWLHAKLSLVALLLIYHFYCKKCMRDLEKDPTQKSGKFYRMFNEIPTILMILIVILVVVKPF
>Mature_150_residues
MQVEFLNEYFMWIKAFHVIAVISWMAALFYLPRLFVYHAENTHKKEFVEVVKIQEKKLYSFIASPAMGFTLITGILMLLI
APEIFKSGGWLHAKLSLVALLLIYHFYCKKCMRDLEKDPTQKSGKFYRMFNEIPTILMILIVILVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 17600; Mature: 17600

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVEFLNEYFMWIKAFHVIAVISWMAALFYLPRLFVYHAENTHKKEFVEVVKIQEKKLYS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FIASPAMGFTLITGILMLLIAPEIFKSGGWLHAKLSLVALLLIYHFYCKKCMRDLEKDPT
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QKSGKFYRMFNEIPTILMILIVILVVVKPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQVEFLNEYFMWIKAFHVIAVISWMAALFYLPRLFVYHAENTHKKEFVEVVKIQEKKLYS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FIASPAMGFTLITGILMLLIAPEIFKSGGWLHAKLSLVALLLIYHFYCKKCMRDLEKDPT
HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QKSGKFYRMFNEIPTILMILIVILVVVKPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]