Click here to switch to the map view.

The map label for this gene is ubiD [C]

Identifier: 109948203

GI number: 109948203

Start: 1510192

End: 1510755

Strand: Reverse

Name: ubiD [C]

Synonym: Hac_1736

Alternate gene names: 109948203

Gene position: 1510755-1510192 (Counterclockwise)

Preceding gene: 109948204

Following gene: 109948202

Centisome position: 97.22

GC content: 45.92

Gene sequence:

>564_bases
ATGAAATTAGTTTTAGGCATCAGCGGGGCGAGTGGAATCCCCCTAGCCTTGCGGTTTTTGGAAAAATTACCCCAAGAAAT
TGAAGCGTTTGTCGTGGCGTCTAAAAACGCGCACATCGTGGCTTTAGAAGAAACCAACATCAACCTTAAAAACGCCATGA
AAGACTTGCGGCCTAGCGCTATTTTTTTTAACGAGCAAGATATCCATGCCAGCATTGCATCAGGGAGCTATGGTATCCAT
AAAATGGCGATCATTCCAACGAGCATGGACATGGTCGCTAAAATCGCGCATGGCTTTGGGGGGGATTTGATCTCCAGGTG
TGCCTCTGTCATGCTTAAAGAAAAGCGCCCCTTGCTCATTGCCCCTAGAGAAATGCCTTTAAGCGATATTATGTTAGAAA
ATTTGCTCAAACTCGCGCGCTCTAATGCGATCATTTCACCGCCCATGATGGCTTATTACACCCAAAGCAAGACTTTAGAA
GCGATGCAAGATTTTTTAGTGGGGAAGTGGTTTGATAGCTTAGGGATAGACAATGACTTATACCCGCGATGGGGGGTTGG
CTGA

Upstream 100 bases:

>100_bases
GCTCAATCAAATCATTCAAGCGAAAAATTTAGAAAGCAATAAAATCTTAAAAGCAAAAGTGTTAAGCAGTTCTAAAGTTC
AAATCTTATAAAGGATCATC

Downstream 100 bases:

>100_bases
TGCAAAAAATAGGCATTTACCCCGGCACTTTTGATCCTGTTACTAATGGGCATATAGACATCATCCATCGCTCTAGCGAA
TTGTTTGAAAAACTCATTGT

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKLVLGISGASGIPLALRFLEKLPQEIEAFVVASKNAHIVALEETNINLKNAMKDLRPSAIFFNEQDIHASIASGSYGIH
KMAIIPTSMDMVAKIAHGFGGDLISRCASVMLKEKRPLLIAPREMPLSDIMLENLLKLARSNAIISPPMMAYYTQSKTLE
AMQDFLVGKWFDSLGIDNDLYPRWGVG

Sequences:

>Translated_187_residues
MKLVLGISGASGIPLALRFLEKLPQEIEAFVVASKNAHIVALEETNINLKNAMKDLRPSAIFFNEQDIHASIASGSYGIH
KMAIIPTSMDMVAKIAHGFGGDLISRCASVMLKEKRPLLIAPREMPLSDIMLENLLKLARSNAIISPPMMAYYTQSKTLE
AMQDFLVGKWFDSLGIDNDLYPRWGVG
>Mature_187_residues
MKLVLGISGASGIPLALRFLEKLPQEIEAFVVASKNAHIVALEETNINLKNAMKDLRPSAIFFNEQDIHASIASGSYGIH
KMAIIPTSMDMVAKIAHGFGGDLISRCASVMLKEKRPLLIAPREMPLSDIMLENLLKLARSNAIISPPMMAYYTQSKTLE
AMQDFLVGKWFDSLGIDNDLYPRWGVG

Specific function: Unknown

COG id: COG0163

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]

Homologues:

Organism=Escherichia coli, GI1788650, Length=189, Percent_Identity=34.3915343915344, Blast_Score=104, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6320746, Length=184, Percent_Identity=38.0434782608696, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003382
- InterPro:   IPR004507 [H]

Pfam domain/function: PF02441 Flavoprotein [H]

EC number: 4.1.1.-

Molecular weight: Translated: 20589; Mature: 20589

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVLGISGASGIPLALRFLEKLPQEIEAFVVASKNAHIVALEETNINLKNAMKDLRPSA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHCCCCE
IFFNEQDIHASIASGSYGIHKMAIIPTSMDMVAKIAHGFGGDLISRCASVMLKEKRPLLI
EEECCCHHEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
APREMPLSDIMLENLLKLARSNAIISPPMMAYYTQSKTLEAMQDFLVGKWFDSLGIDNDL
CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YPRWGVG
CCCCCCC
>Mature Secondary Structure
MKLVLGISGASGIPLALRFLEKLPQEIEAFVVASKNAHIVALEETNINLKNAMKDLRPSA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHCCCCE
IFFNEQDIHASIASGSYGIHKMAIIPTSMDMVAKIAHGFGGDLISRCASVMLKEKRPLLI
EEECCCHHEEEECCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
APREMPLSDIMLENLLKLARSNAIISPPMMAYYTQSKTLEAMQDFLVGKWFDSLGIDNDL
CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YPRWGVG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Carbon Lyases; Carboxy-Lyases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]