| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is mod [H]
Identifier: 109948199
GI number: 109948199
Start: 1506507
End: 1508546
Strand: Reverse
Name: mod [H]
Synonym: Hac_1732
Alternate gene names: 109948199
Gene position: 1508546-1506507 (Counterclockwise)
Preceding gene: 109948200
Following gene: 109948198
Centisome position: 97.08
GC content: 38.19
Gene sequence:
>2040_bases ATGCCAGCTTTTAAGCTAGAAGATGATGTTAATGACTATGTTAAAAAAGAATTGACAAATTTAGGGTTGATAAAAAATAA GGATTTTAACGTTGAAGGGAAAATGAGCGATAGCCTTAAAAACGCCCTTTTGAATGCGAGTAAAACCAAAAACAAAGATT CTTTTGGAAGACCGGATTTTAGCTTAGAAAAATACACGCACCCTAAAAATAAAGGGAGTGTTATCCCTATAATCATAGAA AACAAGCTCTACGCTAAACATTTAAAAAAGCTCAAAAACGACACGCTGCAAAACGATGATAATTCCATTTCAAAATTCGC CGTGAATGGGGCTTTGCACTACGCTCAAAACATCTTAAGAGACAAAGAAAAATATAAAGAATGTATCGCTATAGGCATCG CTGGCGATGATGAGAAAAACCTTTTTATAGAAGTGTATTATGTTTTTGCAAGCGGGATCAATTCGCACAAACTCACCCAT ACCAAAAATTTGCATTTTTTAGAAAATCAAGAATCGTTTAACGCTTTTTATGAAGAGTGCACGCTCACTGAAGAAGAAAA GCATTCAATCTTAATCAAAACCAAAGCCGATCTAAACGAAACCGCTAAAAAACTCAACCGCCTTATGCATAACCACAACA TCACAGCGCCTCAGCGCGTGCTATACGTGAGCGGCATGCTTTTATCCATGCAAGAAATTAAGGGCAAAAAAGAGGGCTTA AAACCAAGCGATTTAAAAGGCGAAGTGACCGACACTAGCCGTGATGGCGTTTTAGTGTTTAACCAAATCAGCGAATTCTT GAAAACCAAAAACTTGAACGAAGAAAAACGAGACTTAATGCTTGCCAGTTTTAAAGAAATCAGTAAAGACCCGCAGCGCG ATAAAATAGCGAGCCTTGATAAAGCCATCAGCATGCATTTAGAAAAAGATGCAAGCATCACTAAGCAAATTTTTACCTTT CTTTATGAATTTGTCCATAAGCCCATTAATGAAAGCGACAATACCGGCCATTTAGACATCATGGGCGAACTGTATAGCGA ATTTTTAAAATACGCTTTAGGGGATGGTAAAGAATTGGGCATTGTGTTAACCCCACCTTATGTCACTAAAATGATGAGCG AACTTCTAGGGGTTAATGCAAAGTCTTTTGTGATGGACTTGGCCGCAGGGAGTGCGGGCTTTTTAATTTCTTCTATGGTG CTAATGATTGAAGACATTGAAAAAACCTATGGCAAAAACACCACTAAAGCGAACGAAAAAATAAAAGCCATGAAAACCAC GCAACTTTTAGGCGTAGAGCTTAACGCTGAAATGTTTTCTCTAGCCACCACTAACATGATTTTAAGAGGCGATGGCTCAA GTTTGATCATCAAAGGCAACACTTTTGAAACCAAGAAAAAGATTTATGAGGATTTTAAACCCAATATCCTTTTATTAAAC CCTCCTTTCAGCCATGAAGAAAACGGCATGCCCTTTATTAAATTCGGATTAGAGCATATGCAAAAAGGCGGTTTAGGGGC GATTATCATCCAAGATAGTGCAGGGAGTGGGCAAGCGTTAAAATCCAATGTGGAAATTTTAAAAAAACACACGCTTTTAG CGAGCATTAAAATGCCCACCGATTTATTCATGCCGCAAGCTGGGGTGCAAACAAGCGTCTATATTTTTAAAGCCCATGAA CCGCATGATTATGAAAAGCCCGTTAAATTCATAGACTTTAGAAACGATGGCTTCAAACGCACCAAAAGAGGCTTGAATGA AATCTCTAACCCCACTAAACGCTACGAAGAAATCATTAAAATTTATAAAGCCGGCTTAAACGCTAAAGTCTCTAAAGAAC TATGGGGCGATTTAGAAACGATCTATATTGAAGATTTTATCGCTAAGCCGCACGAAAACAAGCATGCTAAAGACTTTAAT TTTGAAGCCCACCAAAAGAATGAGACCAAACCCGCGCTAGAGGATTTTAAAAGAACGATAGCCGATTACCTTTCTTATGA AGTGGGCTTGATTTTAAAAAACCAAACGCCCCCAAAGTGA
Upstream 100 bases:
>100_bases TAAAATATCTTAAAACTCTCAATATTAAAGCGCATTTTGCGATCGCGCTTTGCAGCGCGGATGAATGAGTTATAATTCTA TTTTCTAAAAGGATGAAAAC
Downstream 100 bases:
>100_bases CAGACCCCCTTAGCAGCCAACTCAACGCTGTTAAGTGGGGCGAGTTCAGATTAGGGGATTTGTTTGAAGCGAGTAATGGC GATTTTGACATCCAAAAACG
Product: type II restriction modification enzyme methyltransferase
Products: NA
Alternate protein names: Adenine-specific methyltransferase activity [H]
Number of amino acids: Translated: 679; Mature: 678
Protein sequence:
>679_residues MPAFKLEDDVNDYVKKELTNLGLIKNKDFNVEGKMSDSLKNALLNASKTKNKDSFGRPDFSLEKYTHPKNKGSVIPIIIE NKLYAKHLKKLKNDTLQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEKNLFIEVYYVFASGINSHKLTH TKNLHFLENQESFNAFYEECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKEGL KPSDLKGEVTDTSRDGVLVFNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLDKAISMHLEKDASITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFLISSMV LMIEDIEKTYGKNTTKANEKIKAMKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETKKKIYEDFKPNILLLN PPFSHEENGMPFIKFGLEHMQKGGLGAIIIQDSAGSGQALKSNVEILKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHE PHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSKELWGDLETIYIEDFIAKPHENKHAKDFN FEAHQKNETKPALEDFKRTIADYLSYEVGLILKNQTPPK
Sequences:
>Translated_679_residues MPAFKLEDDVNDYVKKELTNLGLIKNKDFNVEGKMSDSLKNALLNASKTKNKDSFGRPDFSLEKYTHPKNKGSVIPIIIE NKLYAKHLKKLKNDTLQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEKNLFIEVYYVFASGINSHKLTH TKNLHFLENQESFNAFYEECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKEGL KPSDLKGEVTDTSRDGVLVFNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLDKAISMHLEKDASITKQIFTF LYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFLISSMV LMIEDIEKTYGKNTTKANEKIKAMKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETKKKIYEDFKPNILLLN PPFSHEENGMPFIKFGLEHMQKGGLGAIIIQDSAGSGQALKSNVEILKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHE PHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSKELWGDLETIYIEDFIAKPHENKHAKDFN FEAHQKNETKPALEDFKRTIADYLSYEVGLILKNQTPPK >Mature_678_residues PAFKLEDDVNDYVKKELTNLGLIKNKDFNVEGKMSDSLKNALLNASKTKNKDSFGRPDFSLEKYTHPKNKGSVIPIIIEN KLYAKHLKKLKNDTLQNDDNSISKFAVNGALHYAQNILRDKEKYKECIAIGIAGDDEKNLFIEVYYVFASGINSHKLTHT KNLHFLENQESFNAFYEECTLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKEGLK PSDLKGEVTDTSRDGVLVFNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLDKAISMHLEKDASITKQIFTFL YEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELGIVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFLISSMVL MIEDIEKTYGKNTTKANEKIKAMKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETKKKIYEDFKPNILLLNP PFSHEENGMPFIKFGLEHMQKGGLGAIIIQDSAGSGQALKSNVEILKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHEP HDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSKELWGDLETIYIEDFIAKPHENKHAKDFNF EAHQKNETKPALEDFKRTIADYLSYEVGLILKNQTPPK
Specific function: Recognizes the double-stranded sequence 5'-CGAN(6)TGC-3' and cleaves bilaterally and symmetrically outside the sequence to release a 34-base pair fragment. Methylation of the recognition sequence occurs on the adenine in either one or both strands [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 76954; Mature: 76823
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAFKLEDDVNDYVKKELTNLGLIKNKDFNVEGKMSDSLKNALLNASKTKNKDSFGRPDF CCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC SLEKYTHPKNKGSVIPIIIENKLYAKHLKKLKNDTLQNDDNSISKFAVNGALHYAQNILR CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH DKEKYKECIAIGIAGDDEKNLFIEVYYVFASGINSHKLTHTKNLHFLENQESFNAFYEEC HHHHHHHHEEEEECCCCCCCEEEEEEEEECCCCCCCCEEECCCCEEECCCHHHHHHHHHH TLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKEGL CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC KPSDLKGEVTDTSRDGVLVFNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH KAISMHLEKDASITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEK EEECCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH IKAMKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETKKKIYEDFKPNILLLN HHHHHHHHEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHHHHCCCCEEEEC PPFSHEENGMPFIKFGLEHMQKGGLGAIIIQDSAGSGQALKSNVEILKKHTLLASIKMPT CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCH DLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIK HHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH IYKAGLNAKVSKELWGDLETIYIEDFIAKPHENKHAKDFNFEAHQKNETKPALEDFKRTI HHHHCCCCEECHHHHCCHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH ADYLSYEVGLILKNQTPPK HHHHHHHEEEEEECCCCCC >Mature Secondary Structure PAFKLEDDVNDYVKKELTNLGLIKNKDFNVEGKMSDSLKNALLNASKTKNKDSFGRPDF CCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC SLEKYTHPKNKGSVIPIIIENKLYAKHLKKLKNDTLQNDDNSISKFAVNGALHYAQNILR CHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH DKEKYKECIAIGIAGDDEKNLFIEVYYVFASGINSHKLTHTKNLHFLENQESFNAFYEEC HHHHHHHHEEEEECCCCCCCEEEEEEEEECCCCCCCCEEECCCCEEECCCHHHHHHHHHH TLTEEEKHSILIKTKADLNETAKKLNRLMHNHNITAPQRVLYVSGMLLSMQEIKGKKEGL CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHCCC KPSDLKGEVTDTSRDGVLVFNQISEFLKTKNLNEEKRDLMLASFKEISKDPQRDKIASLD CCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH KAISMHLEKDASITKQIFTFLYEFVHKPINESDNTGHLDIMGELYSEFLKYALGDGKELG HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEE IVLTPPYVTKMMSELLGVNAKSFVMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEK EEECCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH IKAMKTTQLLGVELNAEMFSLATTNMILRGDGSSLIIKGNTFETKKKIYEDFKPNILLLN HHHHHHHHEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHHHHCCCCEEEEC PPFSHEENGMPFIKFGLEHMQKGGLGAIIIQDSAGSGQALKSNVEILKKHTLLASIKMPT CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCH DLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIK HHCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH IYKAGLNAKVSKELWGDLETIYIEDFIAKPHENKHAKDFNFEAHQKNETKPALEDFKRTI HHHHCCCCEECHHHHCCHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH ADYLSYEVGLILKNQTPPK HHHHHHHEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8451198; 8276869 [H]