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The map label for this gene is rbn [C]

Identifier: 109948196

GI number: 109948196

Start: 1503455

End: 1504273

Strand: Reverse

Name: rbn [C]

Synonym: Hac_1729

Alternate gene names: 109948196

Gene position: 1504273-1503455 (Counterclockwise)

Preceding gene: 109948197

Following gene: 109948194

Centisome position: 96.8

GC content: 39.44

Gene sequence:

>819_bases
TTGAAAAACGCCTTTTGGGGGTTAAGCGAGTTGTTTTACTACGCTTCAAGCTTGAGTTTTTACACGATTTTGTCCTTATC
GCCCATTTTGTTGTTTGTGTTCAGTCTTTTTGTGTCTGATTACATGCAAGCGCACAGCGGTGAAGTGGAAGCCTTGATTT
TCCCTAACGCCCCCAAACTCATTGGCGCGATCAAGGATTTTTTGGAAAACTTTAAAAAAACCAATACGGCATTAGGCACT
CTTGAAGCGGTGTCTATTGTGGTGGCGTTGGTGTTGTTTTGTGAAAATTACCGATCCATTGCATCCAAGATTTTTGATGC
AAAGCCTAGGGATTATGCGCGTTGCAGAGGTAAAGAAATCTTTTTGTTTTGGGGGTTTGGCACGACTTTAGTGTTTTTAT
TCGCTTTGCCTTTGGTGGTGTTTTTTGACATTAAGATCCGAGTGTTTTTTGAAGATAAAAATTCAAGTTTGTTGCATGTT
TTAAGATGGATGGGCACTTATGCGTTTTTTTTAATCCTTTTTACCATTCCCACTAATAAGGTGTTTAAGCATTATTTTTG
GGTGTTTTTGTGGGTGTTTTTCACGAGCGTTTCTTGGCATGTGCTGAAATGGGCTTTCACTTATTATGTGTTGTATAACC
GCACTTACCATGAGCTTTATGGGAGCGTTTCTATTTTATGGTTTTTGATGAGCTGGGTGTATGTGAGCTGGCTTGTGATT
TTGATTGGCATGCATGGGTGCAAGGTGTGCGACGCATGCGATCCTAAAGAAGCGTTTAAGAAATTTTTAGGCTTTTTTAA
AAAAAGAAGCTTGATATGA

Upstream 100 bases:

>100_bases
CTTATGGCTTGAAAATGGCGGCAAGCTGTCATTAATGAGAGAACTTTTTAAAAGCATCAGAGGGTTTTTGTGCCTTCTTA
AAATGATTTTCCCCCAGCGC

Downstream 100 bases:

>100_bases
AAAAGTTTTCTTTGGATCTATTCTAAAAATTTAAAACTTATAGCTGTATGCCGCATAAAATAAGGGCGAAGTCTCAAAGC
GTTGGGAATCAGAAAGCAAT

Product: tRNA processing ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVFFDIKIRVFFEDKNSSLLHV
LRWMGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSILWFLMSWVYVSWLVI
LIGMHGCKVCDACDPKEAFKKFLGFFKKRSLI

Sequences:

>Translated_272_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVFFDIKIRVFFEDKNSSLLHV
LRWMGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSILWFLMSWVYVSWLVI
LIGMHGCKVCDACDPKEAFKKFLGFFKKRSLI
>Mature_272_residues
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKLIGAIKDFLENFKKTNTALGT
LEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEIFLFWGFGTTLVFLFALPLVVFFDIKIRVFFEDKNSSLLHV
LRWMGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSILWFLMSWVYVSWLVI
LIGMHGCKVCDACDPKEAFKKFLGFFKKRSLI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31880; Mature: 31880

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
IGAIKDFLENFKKTNTALGTLEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
FLFWGFGTTLVFLFALPLVVFFDIKIRVFFEDKNSSLLHVLRWMGTYAFFLILFTIPTNK
EEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHH
VFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSILWFLMSWVYVSWLVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGMHGCKVCDACDPKEAFKKFLGFFKKRSLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNAFWGLSELFYYASSLSFYTILSLSPILLFVFSLFVSDYMQAHSGEVEALIFPNAPKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
IGAIKDFLENFKKTNTALGTLEAVSIVVALVLFCENYRSIASKIFDAKPRDYARCRGKEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEE
FLFWGFGTTLVFLFALPLVVFFDIKIRVFFEDKNSSLLHVLRWMGTYAFFLILFTIPTNK
EEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHH
VFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHELYGSVSILWFLMSWVYVSWLVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIGMHGCKVCDACDPKEAFKKFLGFFKKRSLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA