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The map label for this gene is hrgA fragment 2

Identifier: 109948004

GI number: 109948004

Start: 1315091

End: 1315783

Strand: Reverse

Name: hrgA fragment 2

Synonym: Hac_1513

Alternate gene names: NA

Gene position: 1315783-1315091 (Counterclockwise)

Preceding gene: 109948005

Following gene: 109948003

Centisome position: 84.67

GC content: 36.51

Gene sequence:

>693_bases
ATGCAACAGAAAAACAAAAAACCTCTTTTTAAGGAGAGAGACTTGCACCCATTGCTTGTGAAATTCCTTCACGAAAATCC
AGATTTCAATCTCCTATGCAAAACCATCTGCCATCAAAAATGTAAAAAAATCTCTGCAGGTAAGACTCGGTGGAATTATC
CTGACATCGTGGGCGTGTATTTTCCCTATGATGAATATTTTCCCTATAATAAATACGAAAAAGAAACTTTGGAGTTTTTA
CACCATACTAGGCAAAAAAGACACAAGCTTTTTTCGTTTGAGCTTAAAATCAAGCTTAATTTTTCCAATCTAAAACCGAG
CTATTTCCAAGCGGTGAGCAATTCCAGTTGGGCTAATGAGGGGTATTTGGTGGTTTTTGAAGAGATTGAAGATGAAGTTT
TGGGCGAATTAAGGCGGCTCAACCAAAGCTTTGGTATAGGGATCATCAAGCTAGAATCTGAGGTTTCAAACTCCAAAATC
TTGTTGCCAGCTAAAGAAAAAGAGATTGATATACCCACACTTAACATGCTTATAGAACAAAGTCCGGAGGATTTTAAACC
TTTTATGGAAAAGATTAACGGACAAATTGAAGTAGGATTTAATAAACCAATGGCGATGTTTGGTTTTGATACAGTGGAAG
GTGATGAAAAGATGCAAAAATACATTGAAGACAAAGGCATTAAAGCAGAGTAG

Upstream 100 bases:

>100_bases
AGAACCTTTTTCTATTGGCTCAAATCTCGTGAAAGAGAATTTCCCCCACAAGAAACCCTAAATGTAAAAGAAGAAAATGA
TACAGAGAGCGAATGTTTAA

Downstream 100 bases:

>100_bases
GGGGAGTAAAAAGCCATTTGCCTTATTCTAATCAAACCCCACACTCCGTTTTTGAAAGCACGGACAAGCTTTTCACTCTC
TATCAAGGGGATTGCAATGA

Product: HrgA protein fragment 2

Products: NA

Alternate protein names: Excinuclease ATPase Subunit

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQQKNKKPLFKERDLHPLLVKFLHENPDFNLLCKTICHQKCKKISAGKTRWNYPDIVGVYFPYDEYFPYNKYEKETLEFL
HHTRQKRHKLFSFELKIKLNFSNLKPSYFQAVSNSSWANEGYLVVFEEIEDEVLGELRRLNQSFGIGIIKLESEVSNSKI
LLPAKEKEIDIPTLNMLIEQSPEDFKPFMEKINGQIEVGFNKPMAMFGFDTVEGDEKMQKYIEDKGIKAE

Sequences:

>Translated_230_residues
MQQKNKKPLFKERDLHPLLVKFLHENPDFNLLCKTICHQKCKKISAGKTRWNYPDIVGVYFPYDEYFPYNKYEKETLEFL
HHTRQKRHKLFSFELKIKLNFSNLKPSYFQAVSNSSWANEGYLVVFEEIEDEVLGELRRLNQSFGIGIIKLESEVSNSKI
LLPAKEKEIDIPTLNMLIEQSPEDFKPFMEKINGQIEVGFNKPMAMFGFDTVEGDEKMQKYIEDKGIKAE
>Mature_230_residues
MQQKNKKPLFKERDLHPLLVKFLHENPDFNLLCKTICHQKCKKISAGKTRWNYPDIVGVYFPYDEYFPYNKYEKETLEFL
HHTRQKRHKLFSFELKIKLNFSNLKPSYFQAVSNSSWANEGYLVVFEEIEDEVLGELRRLNQSFGIGIIKLESEVSNSKI
LLPAKEKEIDIPTLNMLIEQSPEDFKPFMEKINGQIEVGFNKPMAMFGFDTVEGDEKMQKYIEDKGIKAE

Specific function: Unknown

COG id: COG2958

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27099; Mature: 27099

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQKNKKPLFKERDLHPLLVKFLHENPDFNLLCKTICHQKCKKISAGKTRWNYPDIVGVY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
FPYDEYFPYNKYEKETLEFLHHTRQKRHKLFSFELKIKLNFSNLKPSYFQAVSNSSWANE
ECCHHCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCHHHHHHHCCCCCCCC
GYLVVFEEIEDEVLGELRRLNQSFGIGIIKLESEVSNSKILLPAKEKEIDIPTLNMLIEQ
CEEEEHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHC
SPEDFKPFMEKINGQIEVGFNKPMAMFGFDTVEGDEKMQKYIEDKGIKAE
CCHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQQKNKKPLFKERDLHPLLVKFLHENPDFNLLCKTICHQKCKKISAGKTRWNYPDIVGVY
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
FPYDEYFPYNKYEKETLEFLHHTRQKRHKLFSFELKIKLNFSNLKPSYFQAVSNSSWANE
ECCHHCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEEECCCCHHHHHHHCCCCCCCC
GYLVVFEEIEDEVLGELRRLNQSFGIGIIKLESEVSNSKILLPAKEKEIDIPTLNMLIEQ
CEEEEHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHC
SPEDFKPFMEKINGQIEVGFNKPMAMFGFDTVEGDEKMQKYIEDKGIKAE
CCHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA