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The map label for this gene is nifU [H]

Identifier: 109947989

GI number: 109947989

Start: 1299767

End: 1300747

Strand: Reverse

Name: nifU [H]

Synonym: Hac_1497

Alternate gene names: 109947989

Gene position: 1300747-1299767 (Counterclockwise)

Preceding gene: 109947990

Following gene: 109947988

Centisome position: 83.71

GC content: 43.43

Gene sequence:

>981_bases
ATGGCAAAACATGATTTAGTGGGATCAGTCCTTTGGGATGCGTATTCTAAAGAAGTTCAAAGACGCATGGATAACCCTAC
GCATTTAGGGGTCATCACAGAAGAGCAGGCTAAAGCCAAAAACGCTAAGCTTATTGTGGCTGATTATGGTGCAGAGGCAT
GCGGGGATGCAGTGAGGTTGTATTGGCTTGTAGATGAAAGCACGGATACGATTATTGATGCGAAATTTAAAAGCTTTGGT
TGTGGGACTGCGATCGCAAGCTCGGATATGATGATAGAATTGTGCTTGAATAAAAGAGTCCAAGATGCGGTAAAAATCAC
GAACTTAGATGTGGAAAGAGGCTTAAGAGACGATCCGGACACGCCGGCTGTCCCTGGGCAAAAAATGCACTGCTCGGTGA
TGGCGTATGATGTGATCAAAAAAGCTGCCGGCATGTATTTGGGGAAAAACGCTGAAGATTTTGAAGAAGAAATCATCGTG
TGCGAGTGCGCTAGGGTGAGTTTAGGCACGATTAAAGAAGTGATCAAGCTCAATGACTTAAAAAGCGTTGAAGAAATCAC
TAACTACACCAAAGCCGGTGCTTTTTGTAAAAGCTGTGTGAAACCAGGAGGGCATGAGAAAAGAAATTACTACTTGGTGG
ATATTCTTAAAGAAGTGCGCGAAGAAATGGAAGCTGAAAAACTTAAAGCCGCAGCGAATAAATCTCAAAGTGGGGAGTTG
GTTTTCAGAGAAATGACAATGGTTCAAAAGATTAAGGCCGTGGATAAAGTCATTGATGAAAATATCCGCCCTATGCTTGT
GATGGACGGAGGGGATTTAGAGATTTTAGACATTAAAGAAAGCGATGATTACATTGATGTGTATATCCGCTACATGGGGG
CATGCGATGGGTGCATGAGCGCGACTACCGGAACTTTATTTGCCATTGAAAACGCCCTGCAAGAATTGCTGGACCGCAAT
ATCAGGGTGTTACCGATTTAA

Upstream 100 bases:

>100_bases
GGAAGCTGAAATTGACAAAACGATTGAAGTTTTCTCTCAAGCGGCTACAAGATTGAGAAATATTTCAAGCTCTTATTAAA
ATACCAATAAAGGAATCAAA

Downstream 100 bases:

>100_bases
ACGGCAATCGCTATGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACTAGCCCTAAATGGCTGGGTAA
GTGCGTTCAATGCAACTCAT

Product: nifU-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDTIIDAKFKSFG
CGTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIV
CECARVSLGTIKEVIKLNDLKSVEEITNYTKAGAFCKSCVKPGGHEKRNYYLVDILKEVREEMEAEKLKAAANKSQSGEL
VFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQELLDRN
IRVLPI

Sequences:

>Translated_326_residues
MAKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDTIIDAKFKSFG
CGTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIV
CECARVSLGTIKEVIKLNDLKSVEEITNYTKAGAFCKSCVKPGGHEKRNYYLVDILKEVREEMEAEKLKAAANKSQSGEL
VFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQELLDRN
IRVLPI
>Mature_325_residues
AKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRLYWLVDESTDTIIDAKFKSFGC
GTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPDTPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIVC
ECARVSLGTIKEVIKLNDLKSVEEITNYTKAGAFCKSCVKPGGHEKRNYYLVDILKEVREEMEAEKLKAAANKSQSGELV
FREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQELLDRNI
RVLPI

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=132, Percent_Identity=38.6363636363636, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI24307953, Length=131, Percent_Identity=38.1679389312977, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI1788878, Length=136, Percent_Identity=34.5588235294118, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17543474, Length=138, Percent_Identity=35.5072463768116, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6325122, Length=100, Percent_Identity=46, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6324800, Length=141, Percent_Identity=35.4609929078014, Blast_Score=80, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21355597, Length=140, Percent_Identity=37.8571428571429, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007419
- InterPro:   IPR016217
- InterPro:   IPR010238
- InterPro:   IPR001075
- InterPro:   IPR002871
- ProDom:   PD002830 [H]

Pfam domain/function: PF04324 Fer2_BFD; PF01106 NifU; PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 36287; Mature: 36156

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRL
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCEEEEEECCCHHCCCEEEE
YWLVDESTDTIIDAKFKSFGCGTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPD
EEEEECCCCCEEECHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
TPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIVCECARVSLGTIKEVIKLNDL
CCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEHHHHCCHHHHHHHHHHHHH
KSVEEITNYTKAGAFCKSCVKPGGHEKRNYYLVDILKEVREEMEAEKLKAAANKSQSGEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACDGCMS
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCHHHH
ATTGTLFAIENALQELLDRNIRVLPI
HCCHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
AKHDLVGSVLWDAYSKEVQRRMDNPTHLGVITEEQAKAKNAKLIVADYGAEACGDAVRL
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCCEEEEEECCCHHCCCEEEE
YWLVDESTDTIIDAKFKSFGCGTAIASSDMMIELCLNKRVQDAVKITNLDVERGLRDDPD
EEEEECCCCCEEECHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
TPAVPGQKMHCSVMAYDVIKKAAGMYLGKNAEDFEEEIIVCECARVSLGTIKEVIKLNDL
CCCCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEHHHHCCHHHHHHHHHHHHH
KSVEEITNYTKAGAFCKSCVKPGGHEKRNYYLVDILKEVREEMEAEKLKAAANKSQSGEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
VFREMTMVQKIKAVDKVIDENIRPMLVMDGGDLEILDIKESDDYIDVYIRYMGACDGCMS
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCHHHH
ATTGTLFAIENALQELLDRNIRVLPI
HCCHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7496536 [H]