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The map label for this gene is yckK [H]

Identifier: 109947817

GI number: 109947817

Start: 1123718

End: 1124491

Strand: Reverse

Name: yckK [H]

Synonym: Hac_1306

Alternate gene names: 109947817

Gene position: 1124491-1123718 (Counterclockwise)

Preceding gene: 109947818

Following gene: 109947816

Centisome position: 72.36

GC content: 39.66

Gene sequence:

>774_bases
ATGAAAAAAATTTCATGCTTATTGCTTGCAATAAGTTTTTTATTGGATTTTTTGAATGCCTCTAGCTTGTATGAACGGCT
TGTTAATAAAGAAACGATCAGCGTTGGTACAGAGGGCATTTACCCCCCTTTCACTTACCATGATAAAGAGGGTAAGCTCA
CCGGCTATGATGTGGAAGTGGCTAGGGAGCTGGCTAAAGAGCTTGGCGTGAAAATCAAATTCCACGAAACTTCATGGGAT
ATTATGCTTACGGGTCTAAAATCAGGGCGTTTTGATATGGTCGCTAATCAAGTGAGTTTGACGACTAAAAAACGCCAAGC
GACTTTTGATAAAAGCTTGCCTTATAGCTACTCAGGTACGATCATGCTGGTTAGAAAAGATGAAAATCGCATTAAAGACA
TTAAAGATATTAAAGGCTTGAGAGCGGCTAACACTTTAAGCTCCACTTATGGGGAAATCGCTTTCAAATACGACGCTCAA
ATCGTTTCAGTGGATTCTATGGCACAAGCGTTGTTATTGGTGGCGCAAAAACGAGCCGATTTGACCTTAAATAGTTCTTT
AGCCATTTTAAACTACCTTAACACCCATAAAAACAACCCCTTTAAAATCGCATGGGAATCCAAAGAAAAAGATGGGGGTG
CTTCCTTTGTCATTAACAAACACCAAGAAAAAGCCTTGGAGCTTATCGACAAGGCGATGCAAAAATTGATAGATAAAGGG
GTTTTGAAACGCTTGGGCGAACAATTTTTTGGAAAAGATGTCAGCCAACCATAA

Upstream 100 bases:

>100_bases
AAAATGATTTAGTTATTTATGTTCCATTCCCTAAAATCTATACAAAATTTTTATTTTGCGCTAGAATGCGCGAAAAATAA
AGATTAGGATTGATTGAAAA

Downstream 100 bases:

>100_bases
TTTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAAGAGCGTTTGGAATTGTTATTAGAGGCTTTCTACCCCATGCTAA
AAGCCGCTTTTTGCATTTCT

Product: polar amino acid ABC transporter periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKKISCLLLAISFLLDFLNASSLYERLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWD
IMLTGLKSGRFDMVANQVSLTTKKRQATFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQ
IVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNNPFKIAWESKEKDGGASFVINKHQEKALELIDKAMQKLIDKG
VLKRLGEQFFGKDVSQP

Sequences:

>Translated_257_residues
MKKISCLLLAISFLLDFLNASSLYERLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWD
IMLTGLKSGRFDMVANQVSLTTKKRQATFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQ
IVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNNPFKIAWESKEKDGGASFVINKHQEKALELIDKAMQKLIDKG
VLKRLGEQFFGKDVSQP
>Mature_257_residues
MKKISCLLLAISFLLDFLNASSLYERLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKELGVKIKFHETSWD
IMLTGLKSGRFDMVANQVSLTTKKRQATFDKSLPYSYSGTIMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQ
IVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNNPFKIAWESKEKDGGASFVINKHQEKALELIDKAMQKLIDKG
VLKRLGEQFFGKDVSQP

Specific function: Part of the ABC transporter complex tcyABC involved in L-cystine import [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=243, Percent_Identity=35.3909465020576, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788649, Length=99, Percent_Identity=31.3131313131313, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787085, Length=228, Percent_Identity=22.8070175438596, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788648, Length=233, Percent_Identity=22.3175965665236, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787031, Length=224, Percent_Identity=25.4464285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787088, Length=230, Percent_Identity=23.4782608695652, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 28895; Mature: 28895

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKISCLLLAISFLLDFLNASSLYERLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEV
CCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHEECCCCCCCCCCCEECCCCCCCCCHHHH
ARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQATFDKSLPYSYSGT
HHHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
IMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRAD
EEEEECCCHHHHHHHHHHCHHHHHHHHHHHHCEEEEECCEEEEHHHHHHHHHHHHHHHCC
LTLNSSLAILNYLNTHKNNPFKIAWESKEKDGGASFVINKHQEKALELIDKAMQKLIDKG
EEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
VLKRLGEQFFGKDVSQP
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKISCLLLAISFLLDFLNASSLYERLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEV
CCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHEECCCCCCCCCCCEECCCCCCCCCHHHH
ARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQATFDKSLPYSYSGT
HHHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
IMLVRKDENRIKDIKDIKGLRAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRAD
EEEEECCCHHHHHHHHHHCHHHHHHHHHHHHCEEEEECCEEEEHHHHHHHHHHHHHHHCC
LTLNSSLAILNYLNTHKNNPFKIAWESKEKDGGASFVINKHQEKALELIDKAMQKLIDKG
EEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
VLKRLGEQFFGKDVSQP
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7551042; 8969502; 9384377 [H]