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The map label for this gene is yckJ [C]

Identifier: 109947816

GI number: 109947816

Start: 1123021

End: 1123716

Strand: Reverse

Name: yckJ [C]

Synonym: Hac_1305

Alternate gene names: 109947816

Gene position: 1123716-1123021 (Counterclockwise)

Preceding gene: 109947817

Following gene: 109947814

Centisome position: 72.31

GC content: 41.09

Gene sequence:

>696_bases
TTGTCTTTGTTTTTTGAATCTTTAGATTTGAGCAAAGAGCGTTTGGAATTGTTATTAGAGGCTTTCTACCCCATGCTAAA
AGCCGCTTTTTGCATTTCTTTGCCTTTGGCGATCATCTCTTTTATTTTGGGCTTATGGCTCGCTATTGTGGTAGCTCTCA
TTAAGATCGCATCCCCTAAACGCCTTATTCATAGGGCTTTATTAGCGGGCGTGAATTTTTATGTGTCAATCATAAGAGGC
ACGCCTTTATTGGTCCAAATCGTGGTGGTGTTTTATGGTTTACCCGCCCTTGGGGTGTATATTGATCCAATCCCGGCAGG
CATTATTGCGTTTTCGCTCAATGTGGGGGCATACGCTTCAGAGACTTTGAGGGCGAGTTTTCTTTCTATCCCTAAAGATC
AATGGGATTCTAGCTTAAGTCTGGGTTTGAATTACTTGCAGACTTTTTGGCATGTCATCTTTTTTCAAGCGCTCAAAGTC
GCCACGCCAAGCTTGAGTAACACTTTCATTAGCCTTTTTAAAGAAACTTCTTTGGCTTCTGTGGTTACTATCGCAGAGAT
TTTTAGAATCGCGCAACAAAAAGCCAATGCAAGCTATGACTTTCTCCCTATTTACCTAGAAGCCGCTTTGATTTACTGGC
TTTTTTGCTTGGCTTTAGAGAGGATTCAAAAGCATGTGGAGAAAATCTTAAATTAG

Upstream 100 bases:

>100_bases
TTGGAGCTTATCGACAAGGCGATGCAAAAATTGATAGATAAAGGGGTTTTGAAACGCTTGGGCGAACAATTTTTTGGAAA
AGATGTCAGCCAACCATAAT

Downstream 100 bases:

>100_bases
TGCTGTAAATTGCCCAACCTTTAAAGACGATTTTTCTCCTTTCTTATGTATCTGGCATGAGATGCATTAAGGACATTTTG
AGCGCCTTAATCAAGGCGTG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLWLAIVVALIKIASPKRLIHRALLAGVNFYVSIIRG
TPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSLNVGAYASETLRASFLSIPKDQWDSSLSLGLNYLQTFWHVIFFQALKV
ATPSLSNTFISLFKETSLASVVTIAEIFRIAQQKANASYDFLPIYLEAALIYWLFCLALERIQKHVEKILN

Sequences:

>Translated_231_residues
MSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLWLAIVVALIKIASPKRLIHRALLAGVNFYVSIIRG
TPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSLNVGAYASETLRASFLSIPKDQWDSSLSLGLNYLQTFWHVIFFQALKV
ATPSLSNTFISLFKETSLASVVTIAEIFRIAQQKANASYDFLPIYLEAALIYWLFCLALERIQKHVEKILN
>Mature_230_residues
SLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLWLAIVVALIKIASPKRLIHRALLAGVNFYVSIIRGT
PLLVQIVVVFYGLPALGVYIDPIPAGIIAFSLNVGAYASETLRASFLSIPKDQWDSSLSLGLNYLQTFWHVIFFQALKVA
TPSLSNTFISLFKETSLASVVTIAEIFRIAQQKANASYDFLPIYLEAALIYWLFCLALERIQKHVEKILN

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=41.4414414414414, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1787030, Length=157, Percent_Identity=33.7579617834395, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082239, Length=165, Percent_Identity=35.1515151515151, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=29.9065420560748, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=29.8165137614679, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787087, Length=233, Percent_Identity=27.0386266094421, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1788645, Length=230, Percent_Identity=25.6521739130435, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=24.8847926267281, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25820; Mature: 25689

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLWLAIVVALIKIASPK
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RLIHRALLAGVNFYVSIIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSLNVGAYAS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHEECCCCHHHHHHCCCCCHHHH
ETLRASFLSIPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFKETSLAS
HHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVTIAEIFRIAQQKANASYDFLPIYLEAALIYWLFCLALERIQKHVEKILN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLFFESLDLSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLWLAIVVALIKIASPK
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
RLIHRALLAGVNFYVSIIRGTPLLVQIVVVFYGLPALGVYIDPIPAGIIAFSLNVGAYAS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHEECCCCHHHHHHCCCCCHHHH
ETLRASFLSIPKDQWDSSLSLGLNYLQTFWHVIFFQALKVATPSLSNTFISLFKETSLAS
HHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VVTIAEIFRIAQQKANASYDFLPIYLEAALIYWLFCLALERIQKHVEKILN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]