| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is fecA [H]
Identifier: 109947814
GI number: 109947814
Start: 1120003
End: 1122528
Strand: Reverse
Name: fecA [H]
Synonym: Hac_1303
Alternate gene names: 109947814
Gene position: 1122528-1120003 (Counterclockwise)
Preceding gene: 109947816
Following gene: 109947805
Centisome position: 72.24
GC content: 43.67
Gene sequence:
>2526_bases TTGCGTAAAAAAGTTTTGTTGGCTTTAACTGCCAGTTTGATTTGCCAAGAGTCTTTGTTCGCTAAGGATAAAGACTACAC TTTAGGCAAGGTTTCTACCGTCGGGAAAAAGGATAAATCCGATTATTCTGGTCAGGTCAATTTGGGTTATAGTGGGATTA CCGCTCCTAAAAGTTGGCAAGATGAAGAAGTGAAAAAATACACAGGAAGCCGCACGGTGATCTCTAATAAAGCGCTCACC CAACAAGCTAACCAAAGCATTGAAGAAGCCTTACAGAATGTCCCCGGTCTGCAAATTAGGAATGCAACAGGTGTAGGGGC TATGCCCACTATCCAAATCCGTGGCTTTGGAGCGGGGGGTTCAGGGCATAGCGATGCGACGCTGATGTTGGTTAATGGTA TTCCTGTGTATATGGCCCCCTACGCTCATATTGGGCTAGATATTTTCCCTGTTACCTTTCAAGCCATTGATCGCATTGAT GTGATCAAAGGTGGAGGTAGCGTGCAATATGGGCCTAACACTTATGGGGGTATTGTCAATATCATCACTAAGCCTATCCC TAATAAATGGGAAAGCCAAGCGGCTGAAAGGGTCACTTATTGGGCTAAAGCTAGAAATGCCGGATTTGCTGCTCCTCCTG ATAAAACCGGTGATCCTTCTTTTATAAAGTCTTTAGGCAATAACCTTCTCTATAACACTTATGTAAGAACTGGAGGGATG ATCAATAAGCATGTGGGTATCCAAGCTCAAGCTAACTGGGTTAGAGGGCAAGGCTTTAGGGATAATAGCCCCTCTAATAT TTCAAACTATTGGCTGGATGGGGTCTATGACATCAATGAAAACAATGGGATTAAAGCCTATTACCAATACTACGATTTTA GTATCGCTCAGCCTGGTTCACTCAGCGAGCAAGATTACAAAATGAACCGCTTTGCTAATTTACGCCCTCTCAACCAAAAA GGCGGGCGTTCACAACGCTTTGGGGCTGTGTATGAAAACCACTTTGGGGATTTAGACAGAGTGGGCGGGACTTTTAGCTT CACCTACTATGGGCAATTGATGACTAGGGACTTTCAAGTGAGCTCTAGTTATAATAGCGCTAACATGGTTACTTGTTTTA GCGAAGCGGCATGTAAAGCTGCAGGACTTCCGGCAGGGTATAACTTGGCTGTGCCTTATTATGCCACTAACTACAATGGT TGGGCAGAAGTAGAAAACCCTGTGCGCTCCATTAATAACGCTTTTGAACCTAAAGTGAGTTTGGTCGTTAATACTGGGAA AGTCAAGCAAACCTTTATCATGGGCTTGCGTTTCATGACCACCACCTTTTTGCAACGCCAATACTTAAACACCAACGAAT GCGCCACTAAACAAAGCGGTGAGGGAGCAGGTTTCTTGTGCGAGGGCGCTAATGTGATGAGCGGTTGGAAGCCCCATATC AAGCATGGCGTCTATAGAAACTGGAATGACTGGCGTAACAATTACACAGCAGTCTATTTGAGCGATCGCATTGAAGCTTG GGACGGGCGCTTTTTCATCGTGCCTGGCTTGCGCTACGCTTTTGTGCAATACAACAACGAAAATGCGGCCGACTGGATGC AAATCCCTGAGAAGGATTTAAAAAAAATCAAGCACATGAACAATTGGATGCCATCAGCCAACATTGGCTTTATCCCTGTG CAGGGCGATCACAATGTGCTCACTTACTTTAACTACCAACGCTCTTTCGTCCCGCCTCAATTAGATATTTTGAGCTATGG AGGAGCGGAGTATTTCACCCAGCATTTTGATACTGTGGAAGCAGGAACGCGCTACACCTATAAAGATAAGTTTAGCTTTA ATGCGGATTACTTTAGAATTTGGGCGCGTGATTTTGCCACTGGGCAGTATTCTGTTTATACAAGTGGTCCTATGAAAGGT AATGTGCGCCCTGTTAATGGTTATTCTCAAGGCGTGGAGCTTGAATTGTATTACAGACCCATTAGAGGGTTGCAATTCCA TGCCGCCTTTAACTATATTGACACTCGTGTAACTAGCCATGGCCCTTTAACAGACTTGAATGGAGATGTGCTAAAAGGGA CTAGCTATAACAAACATTTCCCTTTTGTAAGCCCTTACCAATTCATTTTTGACGCTCGTTATAATTATCATAAAACCACC ATTGGTATTTCTAGCTATTTTTATAGCCGCGCTTATAGTGGGATCAGCAACAGTGCAGCAGGAGGCTATTATGGGATGCA ATACTATAGTGGAGGGAATAACTATGAAAGCGTTTCTAATAGCGGTTACCAATGCGAAGCTTGGTGTATGACCCAACATG AAGGGCTTTTGCCTTGGTATTGGGTGTGGAATATCCAAGTGAGCCAAATTTTTTGGGAAAACGGAAGACACAAAGTTATA GGAAGTTTGCAAGTCAATAATATCTTCAACATGAAGTATTATTTTACTGGGATTGGTTCTAGCCCTGCAGGCTTACAACC TGGACCTGGAAGATCGGTTACAGCGTATTTAAACTACACTTTCTAA
Upstream 100 bases:
>100_bases TCTTTAGTTTTTATTACCTACGACTGCCATTTGTGTTATCGTAATTTTACTTAAGAAATTTAGATAATTTTTAAATCTCT CAAAATACAAGGAGTTTGCG
Downstream 100 bases:
>100_bases GGCTTTTAAAAAAAGGGGGGGATTATTTGCTATGATGGGTTACTGAATAAAAGTTTCTTTTTATAGCGGCTAAAACTCCA ACAAAACCACTCCCATTAAT
Product: iron(III) dicitrate transport protein
Products: NA
Alternate protein names: Iron(III) dicitrate transport protein fecA [H]
Number of amino acids: Translated: 841; Mature: 841
Protein sequence:
>841_residues MRKKVLLALTASLICQESLFAKDKDYTLGKVSTVGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIGLDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNKWESQAAERVTYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRTGGM INKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGVYDINENNGIKAYYQYYDFSIAQPGSLSEQDYKMNRFANLRPLNQK GGRSQRFGAVYENHFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACKAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLVVNTGKVKQTFIMGLRFMTTTFLQRQYLNTNECATKQSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNDWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAADWMQIPEKDLKKIKHMNNWMPSANIGFIPV QGDHNVLTYFNYQRSFVPPQLDILSYGGAEYFTQHFDTVEAGTRYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPYQFIFDARYNYHKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVSNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHKVI GSLQVNNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF
Sequences:
>Translated_841_residues MRKKVLLALTASLICQESLFAKDKDYTLGKVSTVGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIGLDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNKWESQAAERVTYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRTGGM INKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGVYDINENNGIKAYYQYYDFSIAQPGSLSEQDYKMNRFANLRPLNQK GGRSQRFGAVYENHFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACKAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLVVNTGKVKQTFIMGLRFMTTTFLQRQYLNTNECATKQSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNDWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAADWMQIPEKDLKKIKHMNNWMPSANIGFIPV QGDHNVLTYFNYQRSFVPPQLDILSYGGAEYFTQHFDTVEAGTRYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPYQFIFDARYNYHKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVSNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHKVI GSLQVNNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF >Mature_841_residues MRKKVLLALTASLICQESLFAKDKDYTLGKVSTVGKKDKSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALT QQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGGSGHSDATLMLVNGIPVYMAPYAHIGLDIFPVTFQAIDRID VIKGGGSVQYGPNTYGGIVNIITKPIPNKWESQAAERVTYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRTGGM INKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGVYDINENNGIKAYYQYYDFSIAQPGSLSEQDYKMNRFANLRPLNQK GGRSQRFGAVYENHFGDLDRVGGTFSFTYYGQLMTRDFQVSSSYNSANMVTCFSEAACKAAGLPAGYNLAVPYYATNYNG WAEVENPVRSINNAFEPKVSLVVNTGKVKQTFIMGLRFMTTTFLQRQYLNTNECATKQSGEGAGFLCEGANVMSGWKPHI KHGVYRNWNDWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAADWMQIPEKDLKKIKHMNNWMPSANIGFIPV QGDHNVLTYFNYQRSFVPPQLDILSYGGAEYFTQHFDTVEAGTRYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKG NVRPVNGYSQGVELELYYRPIRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPYQFIFDARYNYHKTT IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVSNSGYQCEAWCMTQHEGLLPWYWVWNIQVSQIFWENGRHKVI GSLQVNNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYTF
Specific function: FecA is the outer membrane receptor protein in the Fe(3+) dicitrate transport system [H]
COG id: COG4772
COG function: function code P; Outer membrane receptor for Fe3+-dicitrate
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790743, Length=266, Percent_Identity=27.0676691729323, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1788478, Length=132, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94518; Mature: 94518
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKKVLLALTASLICQESLFAKDKDYTLGKVSTVGKKDKSDYSGQVNLGYSGITAPKSWQ CCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCC DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC SGHSDATLMLVNGIPVYMAPYAHIGLDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN CCCCCEEEEEEECCCEEECCHHHCCCEEEEHHHHHHCCEEEEECCCCEEECCCCCCCHHE IITKPIPNKWESQAAERVTYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRTGGM EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE INKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGVYDINENNGIKAYYQYYDFSIAQPGS EECCCCCEEECCEEECCCCCCCCCCCCHHEEECEEEEECCCCCEEEEEEEEEEEECCCCC LSEQDYKMNRFANLRPLNQKGGRSQRFGAVYENHFGDLDRVGGTFSFTYYGQLMTRDFQV CCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE SSSYNSANMVTCFSEAACKAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE LVVNTGKVKQTFIMGLRFMTTTFLQRQYLNTNECATKQSGEGAGFLCEGANVMSGWKPHI EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCHHH KHGVYRNWNDWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAADWMQIPEKDL HCCCCCCCHHHCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCHHHHHCCHHHH KKIKHMNNWMPSANIGFIPVQGDHNVLTYFNYQRSFVPPQLDILSYGGAEYFTQHFDTVE HHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCHHH AGTRYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPYQFIFDARYNYHKTT CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHEEECCCCEEEEE IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVSNSGYQCEAWCMTQHEGLLPWY EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHCCCCCEEEEEEEECCCCCCEEE WVWNIQVSQIFWENGRHKVIGSLQVNNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT EEEEEEEEEEEECCCCEEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC F C >Mature Secondary Structure MRKKVLLALTASLICQESLFAKDKDYTLGKVSTVGKKDKSDYSGQVNLGYSGITAPKSWQ CCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCC DEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGLQIRNATGVGAMPTIQIRGFGAGG HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCC SGHSDATLMLVNGIPVYMAPYAHIGLDIFPVTFQAIDRIDVIKGGGSVQYGPNTYGGIVN CCCCCEEEEEEECCCEEECCHHHCCCEEEEHHHHHHCCEEEEECCCCEEECCCCCCCHHE IITKPIPNKWESQAAERVTYWAKARNAGFAAPPDKTGDPSFIKSLGNNLLYNTYVRTGGM EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCE INKHVGIQAQANWVRGQGFRDNSPSNISNYWLDGVYDINENNGIKAYYQYYDFSIAQPGS EECCCCCEEECCEEECCCCCCCCCCCCHHEEECEEEEECCCCCEEEEEEEEEEEECCCCC LSEQDYKMNRFANLRPLNQKGGRSQRFGAVYENHFGDLDRVGGTFSFTYYGQLMTRDFQV CCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCEEEEEEEEEEEEEEEEE SSSYNSANMVTCFSEAACKAAGLPAGYNLAVPYYATNYNGWAEVENPVRSINNAFEPKVS ECCCCCCCEEEEEHHHHHHHCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHCCCCEEE LVVNTGKVKQTFIMGLRFMTTTFLQRQYLNTNECATKQSGEGAGFLCEGANVMSGWKPHI EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECCCCCCCCCHHH KHGVYRNWNDWRNNYTAVYLSDRIEAWDGRFFIVPGLRYAFVQYNNENAADWMQIPEKDL HCCCCCCCHHHCCCEEEEEEECCEECCCCCEEEECCCEEEEEEECCCCCHHHHHCCHHHH KKIKHMNNWMPSANIGFIPVQGDHNVLTYFNYQRSFVPPQLDILSYGGAEYFTQHFDTVE HHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCHHH AGTRYTYKDKFSFNADYFRIWARDFATGQYSVYTSGPMKGNVRPVNGYSQGVELELYYRP CCCEEEEECCCCCCCCEEEEEEHHCCCCEEEEEECCCCCCCEEECCCCCCCEEEEEEEEC IRGLQFHAAFNYIDTRVTSHGPLTDLNGDVLKGTSYNKHFPFVSPYQFIFDARYNYHKTT CCCEEEEEEHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCHHHHEEECCCCEEEEE IGISSYFYSRAYSGISNSAAGGYYGMQYYSGGNNYESVSNSGYQCEAWCMTQHEGLLPWY EEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHCCCCCEEEEEEEECCCCCCEEE WVWNIQVSQIFWENGRHKVIGSLQVNNIFNMKYYFTGIGSSPAGLQPGPGRSVTAYLNYT EEEEEEEEEEEECCCCEEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2836368; 7610040; 9278503; 2254251; 2651410 [H]