The gene/protein map for NC_008229 is currently unavailable.
Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

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The map label for this gene is vdlC [H]

Identifier: 109947795

GI number: 109947795

Start: 1096855

End: 1097691

Strand: Reverse

Name: vdlC [H]

Synonym: Hac_1274

Alternate gene names: 109947795

Gene position: 1097691-1096855 (Counterclockwise)

Preceding gene: 109947797

Following gene: 109947794

Centisome position: 70.64

GC content: 39.78

Gene sequence:

>837_bases
ATGGATGCCAACGAGCGAAAAGAAAAAGTAGCGATCATCACAGGGGCGAGTTCAGGCATTGGGCTAGAATGTGCATTGAT
GTTATTAGAGCAAGGCTATAAGGTTTATGCACTCTCTAGGCGTGCGAGCTTGTGCGAAAAATTAGAGCATGCATTATGCG
AGCGAGTCAATATTGATGTGAGCGATTCTAACGCTTTAAAAGAAGTGTTTTTAAACATTAGCGCTAAAGAAAAACATTGC
GATATTTTAATCAATTCCGCCGGTTATGGGGTGTTGGGGAGTATAGAAGACACGCCTATGAATGAAGTTAAAAGGCAATT
TAGCGTGAATTTTTTTGCTCTTTGTGAAGTGGTGCAGTTTTGTTTGCCTTTATTAAAAAACAAGCCTTATTCTAAAATCT
TTAACCTTTCTTCCATCGCAGGGTGCATGAGCGTGCTTTTTTTTGGCTATTATGGCGCGAGTAAGCATGCATTAGAGGCT
TATAGCGATGCGTTGCGTTTAGAGCTTATGCCCTTTAAGATTCAAGTGTGTTTGATTGAGCCAGGACCAGTGAAAAGCAA
TTGGGAAAAAACCGCTTTTGAAAATGATGAGCATAAAAACAGCGTTTATGCCTTGGATTTAGAAAAAACTAAAAGCTTTT
ATTCTAGCGTGTATCAAAACGCCTTAAGCGCTAAAGAAGTGGCGCAAAAAATCGTTTCTCTCACTGCACGCCAACAAATC
AAGTCTCGTTATGCGATCGGCTTAAAAGCGCAGTTATTGTTAGCTTTATACAAGATTCTCCCTAGTGGTTGGTATGACTT
TTTATTTAGATTAATCGTTCTTGGGAGGAAAGCGTGA

Upstream 100 bases:

>100_bases
TGAAAAACTTTTTCATAAACTATATGTTAGTCAAAATTGAGTAACATTCCGTGAATAATTTAAAAGAAAAAATAATAATG
AGAGAGTTTAGCGTTAAATA

Downstream 100 bases:

>100_bases
TGCTTAAAACCTATCATATCGCCTTGGCTTGTGTGATTTTAGCGGTGGTGGTGCTTTTGTTTGGGGGGGAGTTCTTGAGT
TTAGAAGAATGGAAAGAAGT

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MDANERKEKVAIITGASSGIGLECALMLLEQGYKVYALSRRASLCEKLEHALCERVNIDVSDSNALKEVFLNISAKEKHC
DILINSAGYGVLGSIEDTPMNEVKRQFSVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGCMSVLFFGYYGASKHALEA
YSDALRLELMPFKIQVCLIEPGPVKSNWEKTAFENDEHKNSVYALDLEKTKSFYSSVYQNALSAKEVAQKIVSLTARQQI
KSRYAIGLKAQLLLALYKILPSGWYDFLFRLIVLGRKA

Sequences:

>Translated_278_residues
MDANERKEKVAIITGASSGIGLECALMLLEQGYKVYALSRRASLCEKLEHALCERVNIDVSDSNALKEVFLNISAKEKHC
DILINSAGYGVLGSIEDTPMNEVKRQFSVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGCMSVLFFGYYGASKHALEA
YSDALRLELMPFKIQVCLIEPGPVKSNWEKTAFENDEHKNSVYALDLEKTKSFYSSVYQNALSAKEVAQKIVSLTARQQI
KSRYAIGLKAQLLLALYKILPSGWYDFLFRLIVLGRKA
>Mature_278_residues
MDANERKEKVAIITGASSGIGLECALMLLEQGYKVYALSRRASLCEKLEHALCERVNIDVSDSNALKEVFLNISAKEKHC
DILINSAGYGVLGSIEDTPMNEVKRQFSVNFFALCEVVQFCLPLLKNKPYSKIFNLSSIAGCMSVLFFGYYGASKHALEA
YSDALRLELMPFKIQVCLIEPGPVKSNWEKTAFENDEHKNSVYALDLEKTKSFYSSVYQNALSAKEVAQKIVSLTARQQI
KSRYAIGLKAQLLLALYKILPSGWYDFLFRLIVLGRKA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=285, Percent_Identity=29.1228070175439, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI20149619, Length=230, Percent_Identity=31.304347826087, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI223718074, Length=276, Percent_Identity=30.7971014492754, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI22507405, Length=286, Percent_Identity=28.6713286713287, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI40548397, Length=284, Percent_Identity=28.169014084507, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI214010158, Length=284, Percent_Identity=28.169014084507, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI214010156, Length=284, Percent_Identity=28.169014084507, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI22758144, Length=284, Percent_Identity=28.169014084507, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI4504503, Length=286, Percent_Identity=27.6223776223776, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=29.8969072164948, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI150247226, Length=282, Percent_Identity=26.5957446808511, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI50726952, Length=285, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI119392083, Length=197, Percent_Identity=28.4263959390863, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI44680136, Length=191, Percent_Identity=27.7486910994764, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI44680133, Length=191, Percent_Identity=27.7486910994764, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI17738292, Length=191, Percent_Identity=27.7486910994764, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=181, Percent_Identity=28.1767955801105, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI157739938, Length=207, Percent_Identity=25.1207729468599, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=260, Percent_Identity=31.1538461538462, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787820, Length=226, Percent_Identity=26.1061946902655, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=27.1604938271605, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=30.0751879699248, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17570069, Length=250, Percent_Identity=28.8, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71997402, Length=172, Percent_Identity=36.6279069767442, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=221, Percent_Identity=28.9592760180996, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=301, Percent_Identity=25.2491694352159, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=301, Percent_Identity=25.2491694352159, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=232, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=199, Percent_Identity=32.1608040201005, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=200, Percent_Identity=31.5, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=29.296875, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=288, Percent_Identity=23.9583333333333, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=295, Percent_Identity=25.4237288135593, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=281, Percent_Identity=25.9786476868327, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=32.6530612244898, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=181, Percent_Identity=32.5966850828729, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=29, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=27.8350515463918, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=31.7708333333333, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=28.8065843621399, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI23397609, Length=201, Percent_Identity=31.3432835820896, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580925, Length=205, Percent_Identity=28.2926829268293, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007236, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355319, Length=198, Percent_Identity=29.2929292929293, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=29.6703296703297, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644339, Length=238, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31139; Mature: 31139

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MDANERKEKVAIITGASSGIGLECALMLLEQGYKVYALSRRASLCEKLEHALCERVNIDV
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
SDSNALKEVFLNISAKEKHCDILINSAGYGVLGSIEDTPMNEVKRQFSVNFFALCEVVQF
CCCHHHHHHHHCCCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHCCHHHHHHHHHHH
CLPLLKNKPYSKIFNLSSIAGCMSVLFFGYYGASKHALEAYSDALRLELMPFKIQVCLIE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEEEEEEEEC
PGPVKSNWEKTAFENDEHKNSVYALDLEKTKSFYSSVYQNALSAKEVAQKIVSLTARQQI
CCCCCCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSRYAIGLKAQLLLALYKILPSGWYDFLFRLIVLGRKA
HHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDANERKEKVAIITGASSGIGLECALMLLEQGYKVYALSRRASLCEKLEHALCERVNIDV
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCC
SDSNALKEVFLNISAKEKHCDILINSAGYGVLGSIEDTPMNEVKRQFSVNFFALCEVVQF
CCCHHHHHHHHCCCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHCCHHHHHHHHHHH
CLPLLKNKPYSKIFNLSSIAGCMSVLFFGYYGASKHALEAYSDALRLELMPFKIQVCLIE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEEEEEEEEC
PGPVKSNWEKTAFENDEHKNSVYALDLEKTKSFYSSVYQNALSAKEVAQKIVSLTARQQI
CCCCCCCCCHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSRYAIGLKAQLLLALYKILPSGWYDFLFRLIVLGRKA
HHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]