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The map label for this gene is tly [H]

Identifier: 109947356

GI number: 109947356

Start: 694111

End: 694818

Strand: Reverse

Name: tly [H]

Synonym: Hac_0796

Alternate gene names: 109947356

Gene position: 694818-694111 (Counterclockwise)

Preceding gene: 109947357

Following gene: 109947355

Centisome position: 44.71

GC content: 34.04

Gene sequence:

>708_bases
ATGCGCCTAGATTACGCCTTATTTGATCAGCATTTAGTGAGTAGCAGAGAAAAAGCGAAAGTGCTGATTTTAAAAAACCA
GGTTTTAGTTAATAAAATAGTGATCTCTAAACCCTCTTTTATGGTTAAAGAGAATGATAAAATTGAATTAGTTGCTACAA
ACTTATTCATTAGCAGGGCTGGGGAAAAATTAGGGGCTTTTTTAGAAAACTACTTGATAGATTTTAAAGAAAAGGTTGTT
TTAGATGTGGGAGCGAGCAAGGGGGGTTTTAGCGAAATGGCTCTTTTAAAAGGGGCTAAAAAGGTGCTTTGCGTGGATGT
GGGGAAAATGCAATTAGATGAGAATTTGAAAAAAGACAAACGCGTAGAATGTTATGAAGAATGCGATATTAGAGCATTTA
AAACGACAGAAAAAATAGATTTAGTGCTTTGCGATGTGAGCTTTATTTCCTTATATTGTATTTTAGAAGCGATTTTGCCT
TTAAGTCATGAATTTTTGGTGCTTTTCAAACCGCAATTTGAAGTGGGCAGGAAGATAAAACGCAATAAAAAGGGGGTGGT
GGTGGATAAAGAAGCGATTTTAAACGCTTTAGAAAACTTTAAAAACCATTTAAAAACAAAGGATTTTCAAATCTTAAAGA
TCCAAGAAAGTTTAGTGAAAGGGAAAAATGGGAATGTTGAATTTTTTATCCATTTCAAGCGAGCCTAA

Upstream 100 bases:

>100_bases
ATTATTTAGCGGTGCAAGAAGCTAAATTGCAGCTTGACGCTTATAGTTTAGGCACGATTATTTTTAATTTCGCTTATCAA
GTCCCCTTACCTCAATTTTA

Downstream 100 bases:

>100_bases
AATTAAAAGCTTAGCGATCGGCAAATTTGATGGCTTGCATTTAGGCCATCAGGCTCTTTTTAAAGAATTAAAAGATCCTA
AAGCGCTTTTAGTCATAGAA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRLDYALFDQHLVSSREKAKVLILKNQVLVNKIVISKPSFMVKENDKIELVATNLFISRAGEKLGAFLENYLIDFKEKVV
LDVGASKGGFSEMALLKGAKKVLCVDVGKMQLDENLKKDKRVECYEECDIRAFKTTEKIDLVLCDVSFISLYCILEAILP
LSHEFLVLFKPQFEVGRKIKRNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA

Sequences:

>Translated_235_residues
MRLDYALFDQHLVSSREKAKVLILKNQVLVNKIVISKPSFMVKENDKIELVATNLFISRAGEKLGAFLENYLIDFKEKVV
LDVGASKGGFSEMALLKGAKKVLCVDVGKMQLDENLKKDKRVECYEECDIRAFKTTEKIDLVLCDVSFISLYCILEAILP
LSHEFLVLFKPQFEVGRKIKRNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
>Mature_235_residues
MRLDYALFDQHLVSSREKAKVLILKNQVLVNKIVISKPSFMVKENDKIELVATNLFISRAGEKLGAFLENYLIDFKEKVV
LDVGASKGGFSEMALLKGAKKVLCVDVGKMQLDENLKKDKRVECYEECDIRAFKTTEKIDLVLCDVSFISLYCILEAILP
LSHEFLVLFKPQFEVGRKIKRNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26872; Mature: 26872

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDYALFDQHLVSSREKAKVLILKNQVLVNKIVISKPSFMVKENDKIELVATNLFISRA
CCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHEEECCCCEEEECCCCEEEEEEHHHHHHH
GEKLGAFLENYLIDFKEKVVLDVGASKGGFSEMALLKGAKKVLCVDVGKMQLDENLKKDK
HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCC
RVECYEECDIRAFKTTEKIDLVLCDVSFISLYCILEAILPLSHEFLVLFKPQFEVGRKIK
CCCHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
RNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRLDYALFDQHLVSSREKAKVLILKNQVLVNKIVISKPSFMVKENDKIELVATNLFISRA
CCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHEEECCCCEEEECCCCEEEEEEHHHHHHH
GEKLGAFLENYLIDFKEKVVLDVGASKGGFSEMALLKGAKKVLCVDVGKMQLDENLKKDK
HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCC
RVECYEECDIRAFKTTEKIDLVLCDVSFISLYCILEAILPLSHEFLVLFKPQFEVGRKIK
CCCHHHHCCCEEEECCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
RNKKGVVVDKEAILNALENFKNHLKTKDFQILKIQESLVKGKNGNVEFFIHFKRA
CCCCCEEEEHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]