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The map label for this gene is ISHa1942 tnpB fragment 1

Identifier: 109947322

GI number: 109947322

Start: 661311

End: 661730

Strand: Direct

Name: ISHa1942 tnpB fragment 1

Synonym: Hac_0755

Alternate gene names: NA

Gene position: 661311-661730 (Clockwise)

Preceding gene: 109947320

Following gene: 109947323

Centisome position: 42.56

GC content: 34.05

Gene sequence:

>420_bases
TTGTATCCTACTAAAGAACAACAAGATAAATTGCAACACTCTTTTTTTGTCTATAATCAAGCTTATAATATTGGCTTGAA
TTTACAACAAGAGCAATACGAGAAAAACAAAGATTTACCTCCCAAAGAAAGAAAGTGGGAAAAATCAAGCGAGTTAGACA
AAGCGATTAAACACCACTTGAACGCTAGGGGTTTAAGCTTTAGTAGTGTAGTAGCCCAACAATCACGCATGAATGTTGAA
AGGGCTTTAAAGGATGCTTTTAAAGTTAAAAACAGAGGCTTTCCTAAATTCAAGAATTCTAAATTCGCTAAACAATCTTT
TTCGTGGAACAATCAAGGTTTCTCTATTAAGGAGAGCGATGATGAACGCTTTAAGATATTCACTTTAATGAAAATGCCCT
TTAATGATGTGCATGCATAG

Upstream 100 bases:

>100_bases
GTCTTCCGTGTCTCATATCATCAATTTTTTTCATAGACCTATTTTAACTAAAAGAGGTTAAAATACTTTTATAAAAGTCA
ATAAGGGTTTTAAATTCCGC

Downstream 100 bases:

>100_bases
AAACTTCCCTCACAATTCTAAAGTCAAACAAATTGTGATCTCTTGCAACCATAGAAAATATTTTGTTAGCTTTAGCGTGG
AATACAAACAAGACATTACT

Product: ISHa1942 transposase B fragment 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWEKSSELDKAIKHHLNARGLSFSSVVAQQSRMNVE
RALKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSIKESDDERFKIFTLMKMPFNDVHA

Sequences:

>Translated_139_residues
MYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWEKSSELDKAIKHHLNARGLSFSSVVAQQSRMNVE
RALKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSIKESDDERFKIFTLMKMPFNDVHA
>Mature_139_residues
MYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWEKSSELDKAIKHHLNARGLSFSSVVAQQSRMNVE
RALKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSIKESDDERFKIFTLMKMPFNDVHA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16483; Mature: 16483

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWEKSSELDKAIKHHL
CCCCHHHHHHHHHHHHEEECEEECCCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHH
NARGLSFSSVVAQQSRMNVERALKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSIKESD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
DERFKIFTLMKMPFNDVHA
CCEEEEEEEEECCCHHCCC
>Mature Secondary Structure
MYPTKEQQDKLQHSFFVYNQAYNIGLNLQQEQYEKNKDLPPKERKWEKSSELDKAIKHHL
CCCCHHHHHHHHHHHHEEECEEECCCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHH
NARGLSFSSVVAQQSRMNVERALKDAFKVKNRGFPKFKNSKFAKQSFSWNNQGFSIKESD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
DERFKIFTLMKMPFNDVHA
CCEEEEEEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA