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The map label for this gene is vacA beta fragment 5

Identifier: 109947106

GI number: 109947106

Start: 442614

End: 442829

Strand: Reverse

Name: vacA beta fragment 5

Synonym: Hac_0511

Alternate gene names: NA

Gene position: 442829-442614 (Counterclockwise)

Preceding gene: 109947107

Following gene: 109947105

Centisome position: 28.5

GC content: 45.37

Gene sequence:

>216_bases
TTGCTTCTCCAGAAGGTGGCTATAAAAAGACCACTTCTCAAAATAACGCTGACAATACCCAACAAAATAGCAGCCAAACG
AATAGCCAAAACCATGAATGGCGCTCAAGCCATTAACCCGCCCAATAGCGTGCAAAAAGTAGAAGTTGAACCCATGAAAG
TCATTGACGGGACTTTTGCTGGCGCTAGGGGCACGGTCGTGAATATTTTCCACTGA

Upstream 100 bases:

>100_bases
CGTTGTGGGTGATCACAACGCCGCTCAAGCAGGCATTGCTGCTAATGAAAAGACTGACATTGCGCGCTGGATTTGTGACA
AAGCATAGGATTAAACCTTA

Downstream 100 bases:

>100_bases
AACACTGACGCTGATGGGACGATTAAAGCGGGAGGGCATAAAGCTTTTGTTAGCGCCAGTGCGGCTCATTTGAATGTCGG
CGAAGGCGCTATCCATCTAT

Product: vacuolating cytotoxin fragment 5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MLLQKVAIKRPLLKITLTIPNKIAAKRIAKTMNGAQAINPPNSVQKVEVEPMKVIDGTFAGARGTVVNIFH

Sequences:

>Translated_71_residues
MLLQKVAIKRPLLKITLTIPNKIAAKRIAKTMNGAQAINPPNSVQKVEVEPMKVIDGTFAGARGTVVNIFH
>Mature_71_residues
MLLQKVAIKRPLLKITLTIPNKIAAKRIAKTMNGAQAINPPNSVQKVEVEPMKVIDGTFAGARGTVVNIFH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7705; Mature: 7705

Theoretical pI: Translated: 11.52; Mature: 11.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQKVAIKRPLLKITLTIPNKIAAKRIAKTMNGAQAINPPNSVQKVEVEPMKVIDGTFA
CCCCHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECCCCC
GARGTVVNIFH
CCCCCEEEEEC
>Mature Secondary Structure
MLLQKVAIKRPLLKITLTIPNKIAAKRIAKTMNGAQAINPPNSVQKVEVEPMKVIDGTFA
CCCCHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEECCCCC
GARGTVVNIFH
CCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA