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The map label for this gene is vacA beta fragment 4

Identifier: 109947107

GI number: 109947107

Start: 442842

End: 442958

Strand: Reverse

Name: vacA beta fragment 4

Synonym: Hac_0512

Alternate gene names: NA

Gene position: 442958-442842 (Counterclockwise)

Preceding gene: 109947108

Following gene: 109947106

Centisome position: 28.51

GC content: 50.43

Gene sequence:

>117_bases
GTGCAAGGGGATGTGAATTGGTGCCATCTCGTTGTGGGTGATCACAACGCCGCTCAAGCAGGCATTGCTGCTAATGAAAA
GACTGACATTGCGCGCTGGATTTGTGACAAAGCATAG

Upstream 100 bases:

>100_bases
GTATTTAGCCCCTTCATGGAGCATGGTGAAGCATCTTGGCATTTTAAATACCCACTACAATATTTCGCATTTGTTCTAGC
GCCCGATAAACACTTCAAAG

Downstream 100 bases:

>100_bases
GATTAAACCTTATTGCTTCTCCAGAAGGTGGCTATAAAAAGACCACTTCTCAAAATAACGCTGACAATACCCAACAAAAT
AGCAGCCAAACGAATAGCCA

Product: vacuolating cytotoxin fragment 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 38; Mature: 38

Protein sequence:

>38_residues
MQGDVNWCHLVVGDHNAAQAGIAANEKTDIARWICDKA

Sequences:

>Translated_38_residues
MQGDVNWCHLVVGDHNAAQAGIAANEKTDIARWICDKA
>Mature_38_residues
MQGDVNWCHLVVGDHNAAQAGIAANEKTDIARWICDKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 4123; Mature: 4123

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGDVNWCHLVVGDHNAAQAGIAANEKTDIARWICDKA
CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MQGDVNWCHLVVGDHNAAQAGIAANEKTDIARWICDKA
CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA