Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 109947064

GI number: 109947064

Start: 411482

End: 411796

Strand: Direct

Name: ycfF [C]

Synonym: Hac_0462

Alternate gene names: 109947064

Gene position: 411482-411796 (Clockwise)

Preceding gene: 109947048

Following gene: 109947065

Centisome position: 26.48

GC content: 34.92

Gene sequence:

>315_bases
ATGAATGTGTTTGAAAAGATAATTAAGGGCGAACTTCCTTGTTCTAAAATTTTAGAAAACGAGCATTTTTTGTCCTTTTA
TGATATTAACCCTAAAGCTAAAGTGCATGCGTTAGTGATCCCTAAAAAAAGCATTCAAGATTTTAATGGCATCACTCCAG
AGCTTATGGCGCAAATGACAAGTTTTATTTTTGAAGTGGTGGAAAAATTGGGCATTAAGGAGAATGGTTACAAGCTTTTA
ACCAATGTGGGTAAAAACGCAGGGCAGGAGGTGATGCATTTGCATTTTCATATTTTAAGCGGGGATAAACATTAA

Upstream 100 bases:

>100_bases
CGCTCTATTAAGGTGTGCAATCCCTATCCTTATATTTTATTTTAAAAAGCTATAATACAACTTTAATAAAAGAAAAACCT
TAAAAGGGAGCAAAAAGCAT

Downstream 100 bases:

>100_bases
AAGCGTTGGTGGTGTTTTGTGCAAGCGTTTTTAAATAGGAGTTTCGCTCCCTTACTTAACCCTAACGAAAGCCCTTTAGA
GCAGGTTAAATCTAGTATTA

Product: HIT-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MNVFEKIIKGELPCSKILENEHFLSFYDINPKAKVHALVIPKKSIQDFNGITPELMAQMTSFIFEVVEKLGIKENGYKLL
TNVGKNAGQEVMHLHFHILSGDKH

Sequences:

>Translated_104_residues
MNVFEKIIKGELPCSKILENEHFLSFYDINPKAKVHALVIPKKSIQDFNGITPELMAQMTSFIFEVVEKLGIKENGYKLL
TNVGKNAGQEVMHLHFHILSGDKH
>Mature_104_residues
MNVFEKIIKGELPCSKILENEHFLSFYDINPKAKVHALVIPKKSIQDFNGITPELMAQMTSFIFEVVEKLGIKENGYKLL
TNVGKNAGQEVMHLHFHILSGDKH

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=103, Percent_Identity=35.9223300970874, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI14211923, Length=105, Percent_Identity=35.2380952380952, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787346, Length=103, Percent_Identity=34.9514563106796, Blast_Score=73, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17506713, Length=103, Percent_Identity=37.8640776699029, Blast_Score=78, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6320078, Length=97, Percent_Identity=37.1134020618557, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574010, Length=105, Percent_Identity=34.2857142857143, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24581222, Length=103, Percent_Identity=34.9514563106796, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 11822; Mature: 11822

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFEKIIKGELPCSKILENEHFLSFYDINPKAKVHALVIPKKSIQDFNGITPELMAQMT
CCHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHCCCCCHHHHHHHH
SFIFEVVEKLGIKENGYKLLTNVGKNAGQEVMHLHFHILSGDKH
HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHEECCCCC
>Mature Secondary Structure
MNVFEKIIKGELPCSKILENEHFLSFYDINPKAKVHALVIPKKSIQDFNGITPELMAQMT
CCHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHCCCCCHHHHHHHH
SFIFEVVEKLGIKENGYKLLTNVGKNAGQEVMHLHFHILSGDKH
HHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]