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The map label for this gene is yggS [C]

Identifier: 109947055

GI number: 109947055

Start: 399567

End: 400235

Strand: Reverse

Name: yggS [C]

Synonym: Hac_0453

Alternate gene names: 109947055

Gene position: 400235-399567 (Counterclockwise)

Preceding gene: 109947056

Following gene: 109947054

Centisome position: 25.76

GC content: 35.28

Gene sequence:

>669_bases
ATGATAGATTATCGCCAAAAAATTGATTTTCTCATTGCAAAAATAGAAAAAGCACGCATCGCCTATTCAAGACACCATAT
TGTAAAAATCGTGGCTATTTCAAAAAACGCTCCCCTAGAAGCCATCCAGCATTACTACAATTGCTCTCAAAGGGCTTTTG
GAGAAAATAAAGTTCAAGATTTAAAAACTAAAATGCACTATTTAGAACATTTGCCCCTTGAGTGGCACATGGTAGGCTCT
TTACAAGAAAATAAGATCAACACGCTTTTAAGTTTAAAACCCGCCCTTTTGCATTCTTTAGACTCTTTAGAACTCGCTTT
AAAAATAGAAAAGCGTTGCAAAACCCTAGGTGTAACCTTAAACGCCCTTTTACAGGTTAATAGCGCGTATGAAAAAAGTA
AAAGTGGGGTAAGACCTGAAGAAACGCTAGATTTTTATTCTCAAATCAGTAAAACTTGCAAACATATCAAGCTTAAGGGG
CTTATGTGTATAGGAGCACACACTGATGATGAAGCAAAAATTGAAAAATCCTTTATAATGACCAAAAAACTTTTTGATCA
ACTAAAGAATGCGAGCATCCTTTCAATGGGCATGAGTAATGATTTTGAATTAGCGATTGCTTGCGGAGCAAATCTTTTAA
GGATTGGCTCTTTTTTGTTTAAAGAGTGA

Upstream 100 bases:

>100_bases
AAAAAAGAAAGGGTTTTTAAAGGATTTTGAAAAGTTGAATCAAAAATTCCATCTCACGCATTCTTTTAGCACCCATAAAG
AAGAACTATAAAGAAGATCT

Downstream 100 bases:

>100_bases
GGTGCTAGAAATTTTTACGCTTGAAAGTGGGGCTGTTTTTATCTCTGATGCACATTTTTTACCTAAAAGCCCTTATTTAA
TCAATACGCTTAAAGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIDYRQKIDFLIAKIEKARIAYSRHHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKTKMHYLEHLPLEWHMVGS
LQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTLNALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKG
LMCIGAHTDDEAKIEKSFIMTKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE

Sequences:

>Translated_222_residues
MIDYRQKIDFLIAKIEKARIAYSRHHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKTKMHYLEHLPLEWHMVGS
LQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTLNALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKG
LMCIGAHTDDEAKIEKSFIMTKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE
>Mature_222_residues
MIDYRQKIDFLIAKIEKARIAYSRHHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKTKMHYLEHLPLEWHMVGS
LQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTLNALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKG
LMCIGAHTDDEAKIEKSFIMTKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=34.7619047619048, Blast_Score=108, Evalue=4e-24,
Organism=Escherichia coli, GI1789321, Length=203, Percent_Identity=33.9901477832512, Blast_Score=107, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=32, Blast_Score=99, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=206, Percent_Identity=36.8932038834951, Blast_Score=99, Evalue=4e-22,
Organism=Drosophila melanogaster, GI45550861, Length=209, Percent_Identity=35.4066985645933, Blast_Score=120, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25267; Mature: 25267

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYRQKIDFLIAKIEKARIAYSRHHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
LKTKMHYLEHLPLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTL
HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKGLMCIGAHTDDEAKIEKSFIM
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
TKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MIDYRQKIDFLIAKIEKARIAYSRHHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
LKTKMHYLEHLPLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTL
HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKGLMCIGAHTDDEAKIEKSFIM
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
TKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]