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The map label for this gene is yajR [H]

Identifier: 109947004

GI number: 109947004

Start: 341156

End: 342544

Strand: Reverse

Name: yajR [H]

Synonym: Hac_0397

Alternate gene names: 109947004

Gene position: 342544-341156 (Counterclockwise)

Preceding gene: 109947010

Following gene: 109947003

Centisome position: 22.04

GC content: 39.09

Gene sequence:

>1389_bases
ATGATAAAAATTGGATATTTTCTTGTAAATTGGATATTTTCTTGTAAAATACTACGCATGTTTAAGAAAATTTTTCCATT
GGCGTTAGTGTCGTCGTTGCGGTTTTTAGGGCTTTTTATTGTTTTGCCTGTCATTAGCTTGTATGCAGATAGTTTCCATT
CAAGCAGTCCTTTGCTTATAGGTTTGGCGGTGGGCGGAGCGTATCTCACGCAAATCATCTTTCAAACCCCTATGGGTATT
CTTAGCGATAAGATAGGCCGTAAAGTGGTGGTAGTGGTGTGCTTGTTGTTGTTTTTAGTGGGCTCGTTAGTGTGCTTTGT
GGCGGATGATATTGTTTTGCTCGTTATTGGGCGCTTCATTCAAGGCATGGGGGCTTTAGGGGGGGTCGTTAGTGCGATGG
TGGCTGATGAAGTGAAAGAAGAAGAGCGCACCAAAGCCATGACCATCATGGGGGTGTTTATTTTCATTAGCTTTACCATA
AGCATGGCGATTGGTCCAGGAGTTGTGGCGTTTTTTGGGGGTGCGAAATGGCTCTTTTTACTCACGGCGATCTTAACTCT
ATTGAGTTTATTGATGCTTTTAAAAGTCAAAGACGCCCCTAAAATTTCTTATCAAATCAAAAATAAAATAGCTTACCAAC
CCAACTCCAAAGCCTTGTATCTCTTGTATCTAAGCTCTTTTTTTGAAAAAGCGTTCATGACGCTTATTTTTGTGCTAATC
CCTTTAGCTTTAGTGAATGAATTCCATAAAGATGAGAGTTTTTTAATTTTAGTGTATGTGCCTGGAGCCCTGCTAGGGGT
TTTAAGCATGGGAATAGCGAGCGTTATGGCTGAAAAATACAATAAGCCTAAAGGGGTGATGCTTTCGGGGGTGTTCTTAT
TTATTGTGAGTTATTTATGCTTGTTTTTAGCAGACTCTAGCTTTTTGGGTAAATATTTATGGCTTTTTATTGTTGGGGTG
GCGTTTTTCTTTATTGGCTTTGCAACCTTGGAGCCTATCATGCAATCTTTAGCGTCTAAATTCGCTAGAGTGCATGAAAA
AGGCAAGGTTTTAGGGCAATTCACCACTTTTGGCTATTTAGGGAGCTTTGTTGGAGGCGTGAGTGGGGGGTTGAGCTACC
ATTATTTAGGCATTTCTAACACGAGCTTAGTGGTTGTTATCTTGGGGCTTGTTTGGGGCTTATCGCTCTTTTTTCTCAAT
AACCCTTCTAAGCAAAAAAATGTTTATTTCCCCTTAGACGCTTATAATGGGGAACAATTTGAAACTTTAGGGGATAAAAT
TATTGAATGGTATGTCAATATTAGCGAAGAAATCATTATTGTGAAATATAATTCCGATCAAATTAGCGAAGAAGAAATCA
TTCATTTAGCGCAAAACTTCAGAAAATAA

Upstream 100 bases:

>100_bases
AGCAAATATTAAAATTATAAAAAATTAAAGAAGAGATTGTACAAAAAAATTTCTTAAAAATCCATTAAACTTTTATTATC
AATCCTACTTTCCTAAATTA

Downstream 100 bases:

>100_bases
ACCAATCAAGGATCAAAAATGACCTATGAAATTTCTAAAAAAGTCTTGCACATTGTAGGCAAGACAAACGCCACCTACAA
ACTCATAGAAGAAGGCGATA

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MIKIGYFLVNWIFSCKILRMFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGI
LSDKIGRKVVVVVCLLLFLVGSLVCFVADDIVLLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMTIMGVFIFISFTI
SMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNKIAYQPNSKALYLLYLSSFFEKAFMTLIFVLI
PLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVFLFIVSYLCLFLADSSFLGKYLWLFIVGV
AFFFIGFATLEPIMQSLASKFARVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHYLGISNTSLVVVILGLVWGLSLFFLN
NPSKQKNVYFPLDAYNGEQFETLGDKIIEWYVNISEEIIIVKYNSDQISEEEIIHLAQNFRK

Sequences:

>Translated_462_residues
MIKIGYFLVNWIFSCKILRMFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGI
LSDKIGRKVVVVVCLLLFLVGSLVCFVADDIVLLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMTIMGVFIFISFTI
SMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNKIAYQPNSKALYLLYLSSFFEKAFMTLIFVLI
PLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVFLFIVSYLCLFLADSSFLGKYLWLFIVGV
AFFFIGFATLEPIMQSLASKFARVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHYLGISNTSLVVVILGLVWGLSLFFLN
NPSKQKNVYFPLDAYNGEQFETLGDKIIEWYVNISEEIIIVKYNSDQISEEEIIHLAQNFRK
>Mature_462_residues
MIKIGYFLVNWIFSCKILRMFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGI
LSDKIGRKVVVVVCLLLFLVGSLVCFVADDIVLLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMTIMGVFIFISFTI
SMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNKIAYQPNSKALYLLYLSSFFEKAFMTLIFVLI
PLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVFLFIVSYLCLFLADSSFLGKYLWLFIVGV
AFFFIGFATLEPIMQSLASKFARVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHYLGISNTSLVVVILGLVWGLSLFFLN
NPSKQKNVYFPLDAYNGEQFETLGDKIIEWYVNISEEIIIVKYNSDQISEEEIIHLAQNFRK

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081738, Length=368, Percent_Identity=32.8804347826087, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 51185; Mature: 51185

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]