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The map label for this gene is ttcA [H]

Identifier: 109947003

GI number: 109947003

Start: 340376

End: 341137

Strand: Reverse

Name: ttcA [H]

Synonym: Hac_0396

Alternate gene names: 109947003

Gene position: 341137-340376 (Counterclockwise)

Preceding gene: 109947004

Following gene: 109946999

Centisome position: 21.95

GC content: 40.68

Gene sequence:

>762_bases
ATGACCTATGAAATTTCTAAAAAAGTCTTGCACATTGTAGGCAAGACAAACGCCACCTACAAACTCATAGAAGAAGGCGA
TAAAGTCTTGTTAGGATTGAGTGGGGGCAAGGATTCTATCATGCTCGCTTGTATTTTAGCCAGAATGCAAAAACATGCCC
CTTTCAAATTTGATTTTAAAGCGGTTACCGTGCATTATGGTTTGGGCGAAGATTTGAAATGGTTGAGCGATTTGTGTAAA
GATCAAGGCATTGAGCATGAGATTATTTACACCCAAATCGCTGCGACTATCAATGAAAAACGCCGTGAAAAAAGCTCGTT
TTGTTCGTTTTGCTCTCGTTTGAGAAGGGGGACTTTGTATTCTAAGGCTTTAGAGGAAGGCTATAATAAAGTCGCTATCG
CGCACCATTTAGATGATGCGGTGGAAAGCTTTTTTATGAATTTCACTTATAATGGGAGTTTAAGGAGCATGCCCCCTATT
TACAGGGCTGAAAACGGCTTGTTGGTGATCCGCCCTTTGATTAAAGTGCGAGAAGCTAGTAGTATTCATTTTGTCACTTC
TCAAAATATCCCCATAGCCCCTGATTGCAATTGCCCAGCCAAACAGCCCACCTCTGATAAACCCCCTATCGCACGATTAG
CCACCAAAAATTTTTTAAAAGAAATGCAAAACCTGCACCCTCATTTCTTTGACAGCCTAGAAAATGCATTCAATAATGTT
CAGGCGAACAGCTTTAGCGACGCTAAATATTTAGATGCTTAA

Upstream 100 bases:

>100_bases
AGAAATCATTATTGTGAAATATAATTCCGATCAAATTAGCGAAGAAGAAATCATTCATTTAGCGCAAAACTTCAGAAAAT
AAACCAATCAAGGATCAAAA

Downstream 100 bases:

>100_bases
GCTTTCTTTAAGCTTTTTTGTTGAGCATTTTAATCACGATTGTGAATAGCACCCCTTCAAAGATAGCTGCCAAAAGCAAT
GCATAGTAAGTGTTTGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTYEISKKVLHIVGKTNATYKLIEEGDKVLLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCK
DQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPI
YRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNV
QANSFSDAKYLDA

Sequences:

>Translated_253_residues
MTYEISKKVLHIVGKTNATYKLIEEGDKVLLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCK
DQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPI
YRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNV
QANSFSDAKYLDA
>Mature_252_residues
TYEISKKVLHIVGKTNATYKLIEEGDKVLLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCKD
QGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIY
RAENGLLVIRPLIKVREASSIHFVTSQNIPIAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNVQ
ANSFSDAKYLDA

Specific function: Required for the thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32) [H]

COG id: COG0037

COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TtcA family [H]

Homologues:

Organism=Escherichia coli, GI1787606, Length=253, Percent_Identity=33.596837944664, Blast_Score=149, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI193211090, Length=246, Percent_Identity=35.3658536585366, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012089
- InterPro:   IPR014729
- InterPro:   IPR011063 [H]

Pfam domain/function: PF01171 ATP_bind_3 [H]

EC number: NA

Molecular weight: Translated: 28566; Mature: 28435

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYEISKKVLHIVGKTNATYKLIEEGDKVLLGLSGGKDSIMLACILARMQKHAPFKFDFK
CCCHHHHHHHHHHCCCCCEEHEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
AVTVHYGLGEDLKWLSDLCKDQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLY
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREAS
HHHHHCCCCEEEHHHHHHHHHHHHHHHCEECCCCCCCCCCEECCCCEEEEEHHHHHHCCC
SIHFVTSQNIPIAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNV
CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
QANSFSDAKYLDA
CCCCCCCCCCCCC
>Mature Secondary Structure 
TYEISKKVLHIVGKTNATYKLIEEGDKVLLGLSGGKDSIMLACILARMQKHAPFKFDFK
CCHHHHHHHHHHCCCCCEEHEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
AVTVHYGLGEDLKWLSDLCKDQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLY
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
SKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREAS
HHHHHCCCCEEEHHHHHHHHHHHHHHHCEECCCCCCCCCCEECCCCEEEEEHHHHHHCCC
SIHFVTSQNIPIAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNV
CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
QANSFSDAKYLDA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA