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The map label for this gene is frdC [H]

Identifier: 109946986

GI number: 109946986

Start: 324821

End: 325588

Strand: Reverse

Name: frdC [H]

Synonym: Hac_0378

Alternate gene names: 109946986

Gene position: 325588-324821 (Counterclockwise)

Preceding gene: 109946997

Following gene: 109946985

Centisome position: 20.95

GC content: 38.67

Gene sequence:

>768_bases
ATGCAACAAGAAGAAATTATAGAGGGTTATTATGGCGCTAGCAAAGGGCTTAAAAAGAGCGGTATTTATGCTAAGCTAGA
TTTTTTACAAAGCGCTACGGGCTTGATTTTAGCACTCTTTATGATAGCACACATGTTTTTGGTTTCAAGTATCTTAATTA
GCGATGAAGCCATGTATAAAGTAGCGAAATTTTTTGAAGGGAGCTTGTTTTTAAAAGCGGGCGAGCCAGCGATTGTGAGC
GTGGTTGCAGCAGGGATCATTCTTATTTTAGTAGTGCATGCGTTTTTGGCGTTGAGAAAATTCCCTATCAATTACAGGCA
ATACAAGGTTTTTAAAACCCATAAGCATTTGATGAAGCATGGCGATACGAGTTTGTGGTTTATCCAAGCTTTCACAGGGT
TTACGATGTTTTTCTTAGCGAGTATCCACTTGTTTGTCATGCTCACAGAGCCTGAAAGCATTGGGCCTCATGGCTCAAGC
TATCGTTTTGTCACGCAAAACTTTTGGCTTTTGTATATTTTCTTATTGTTTGCTGTGGAGTTGCATGGCTCTATTGGGTT
GTATCGTTTAGCGATTAAATGGGGGTGGTTTAAAAACATCAGTATTCAAGGCTTAAGGAAAATCAAATGGGCGATGAGCG
TGTTTTTTATTGTTTTAGGGCTTTGCACCTATGGGGCTTATATCAAAAAAGGTTTGGAAAACAAAGATAATGGCATTAAA
ACCATGCAAGAAGCCATAGAGACTGATGGAAAATTCCACAAAGAATAA

Upstream 100 bases:

>100_bases
ATCCATTTATAAGAAAAGTTATTTCAAATGTAGTAAAATCAAAGCAGTGTTTTTGCGTCAAGCGATTTAGGTTAAATTTG
AGTTTTTAGGAGCAGTTTTT

Downstream 100 bases:

>100_bases
GGGTAGAAAATGAAAATAACATATTGTGATGCGTTGATTATTGGAGGCGGACTAGCCGGCTTAAGGGCTAGTATTGCATG
CAAACAAAAGGGTTTAAACA

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGIILILVVHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQAFTGFTMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNISIQGLRKIKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIETDGKFHKE

Sequences:

>Translated_255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGIILILVVHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQAFTGFTMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNISIQGLRKIKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIETDGKFHKE
>Mature_255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGIILILVVHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQAFTGFTMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNISIQGLRKIKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIETDGKFHKE

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 29023; Mature: 29023

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAKFFEGSLFLKAGEPAIVSVVAAGIILILVVHAFLALRKFPINYRQYKVFKTHKHLMKH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
GDTSLWFIQAFTGFTMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE
CCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
LHGSIGLYRLAIKWGWFKNISIQGLRKIKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
HCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TMQEAIETDGKFHKE
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAKFFEGSLFLKAGEPAIVSVVAAGIILILVVHAFLALRKFPINYRQYKVFKTHKHLMKH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
GDTSLWFIQAFTGFTMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE
CCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
LHGSIGLYRLAIKWGWFKNISIQGLRKIKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
HCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TMQEAIETDGKFHKE
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]