Definition Helicobacter acinonychis str. Sheeba chromosome, complete genome.
Accession NC_008229
Length 1,553,927

Click here to switch to the map view.

The map label for this gene is aroAII [H]

Identifier: 109946927

GI number: 109946927

Start: 267718

End: 269067

Strand: Direct

Name: aroAII [H]

Synonym: Hac_0314

Alternate gene names: 109946927

Gene position: 267718-269067 (Clockwise)

Preceding gene: 109946924

Following gene: 109946933

Centisome position: 17.23

GC content: 43.48

Gene sequence:

>1350_bases
ATGTCAAATACAACTTGGTCGCCAACTTCATGGCATTCTTTTAAGATAGAGCAACACCCCATTTATAAAGACCAAAAAGA
GTTAGAGAGAGTTAAAAAAGAGTTGCACTCCTACCCTCCTTTAGTGTTTGTTGGTGAAGCGAGAAACTTACAAGAGCGCT
TAGCTCAAGCGATTGACAATAAGGCGTTTTTATTGCAAGGGGGCGATTGCGCAGAGTCGTTTTCTCAATTTAACGCTAAC
AGGATCAGAGACATGTTTAAAGTGATGATGCAAATGGCGATTGTTCTCACTTTTGCTGGCTCTATACCGATCGTGAAAGT
GGGGCGCATTGCTGGGCAGTTTGCCAAACCGCGCTCCAATGCGACTGAAATCTTAGACAATGAAGAAGTGTTGAGTTATA
GAGGGGATATTATCAATGGGATTCCCAAAAAAGAAAGAGAGCCAAATCCTGAAAGAATGCTTAAAGCCTACCATCAAAGC
GTGGCGACTTTAAATCTTATTAGGGCTTTTGCTCAAGGCGGGTTAGCCAATTTGGAGCAAGTGCATCGTTTCAATTTGGA
TTTTGTCAAAAACAACGACTTTGGGCAAAAATACCAACAAATCGCTGACAGGATCACGCAAGCTTTAGGGTTTATGCAAG
CATGCGGGGTGGAGATAGAGCGAACGCCTATCCTTAGGGAGGTGGAATTTTACACGAGCCACGAAGCGTTACTGCTCCAT
TATGAAGAGCCTTTGGTGCGTAAGGATAGCTTGACTGACCAGTTTTATGATTGCTCCGCACACATGCTGTGGATTGGCGA
AAGGACAAGAGATCCTAAAGGCGCTCATGTGGAGTTTTTAAGGGGGGTTTGTAACCCTATTGGTGTGAAAATTGGGCCTA
ATGCGAGTATAAGCGAAGTGCTAGAATTGTGCGATGTTTTAAACCCGCACAACATTAAGGGGCGTTTGAATTTGATCGTG
CGCATGGGTTCTAAGATGATTAAAGAGCGTTTGCCTAAACTTTTACAAGGGGTGTTGAAAGAAAAACGCCATATCTTATG
GAGTATTGATCCCATGCATGGCAACACGGTAAAAACCAGCTCAGGGGTTAAAACAAGGGCTTTTGATTGCGTGTTAGATG
AGGTGAAAAGCTTTTTTGAAATCCATAGGGCTGAAGGTAGTTTAGCTTCTGGGGTTCATTTGGAAATGACAGGTGAGAAT
GTTACAGAATGTATCGGTGGCTCGCAAGCGATCACCGAAGAGGGTTTGAGCTACCATTATTATACGCAATGCGATCCAAG
ACTAAACGCCACTCAAGCCCTAGAACTCGCTTTTTTGATTGCGGACATGCTTAAAAAACAACGCGTTTAG

Upstream 100 bases:

>100_bases
GAAGCGTGCATTTACTTTCTAAAATCCACGATTTAACCCGCACAAGCTATAATAACGCTTAAAAAATTAAATTAAAGAAA
AGAATATTAGGGATATAGAA

Downstream 100 bases:

>100_bases
TTGAATAAATTAAAGCTCTATTTTAATTAAAAATGGGTCACTAAACTTTTTTGTCATTTTAGATTTACTTTATTATAAAA
CTCTTAAGGATAGGGGGTGT

Product: phospho-2-dehydro-3-deoxyheptonate aldolase

Products: NA

Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSNTTWSPTSWHSFKIEQHPIYKDQKELERVKKELHSYPPLVFVGEARNLQERLAQAIDNKAFLLQGGDCAESFSQFNAN
RIRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSNATEILDNEEVLSYRGDIINGIPKKEREPNPERMLKAYHQS
VATLNLIRAFAQGGLANLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIERTPILREVEFYTSHEALLLH
YEEPLVRKDSLTDQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASISEVLELCDVLNPHNIKGRLNLIV
RMGSKMIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTSSGVKTRAFDCVLDEVKSFFEIHRAEGSLASGVHLEMTGEN
VTECIGGSQAITEEGLSYHYYTQCDPRLNATQALELAFLIADMLKKQRV

Sequences:

>Translated_449_residues
MSNTTWSPTSWHSFKIEQHPIYKDQKELERVKKELHSYPPLVFVGEARNLQERLAQAIDNKAFLLQGGDCAESFSQFNAN
RIRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSNATEILDNEEVLSYRGDIINGIPKKEREPNPERMLKAYHQS
VATLNLIRAFAQGGLANLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIERTPILREVEFYTSHEALLLH
YEEPLVRKDSLTDQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASISEVLELCDVLNPHNIKGRLNLIV
RMGSKMIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTSSGVKTRAFDCVLDEVKSFFEIHRAEGSLASGVHLEMTGEN
VTECIGGSQAITEEGLSYHYYTQCDPRLNATQALELAFLIADMLKKQRV
>Mature_448_residues
SNTTWSPTSWHSFKIEQHPIYKDQKELERVKKELHSYPPLVFVGEARNLQERLAQAIDNKAFLLQGGDCAESFSQFNANR
IRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSNATEILDNEEVLSYRGDIINGIPKKEREPNPERMLKAYHQSV
ATLNLIRAFAQGGLANLEQVHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIERTPILREVEFYTSHEALLLHY
EEPLVRKDSLTDQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASISEVLELCDVLNPHNIKGRLNLIVR
MGSKMIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTSSGVKTRAFDCVLDEVKSFFEIHRAEGSLASGVHLEMTGENV
TECIGGSQAITEEGLSYHYYTQCDPRLNATQALELAFLIADMLKKQRV

Specific function: Unknown

COG id: COG3200

COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II DAHP synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002480 [H]

Pfam domain/function: PF01474 DAHP_synth_2 [H]

EC number: =2.5.1.54 [H]

Molecular weight: Translated: 50913; Mature: 50782

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTTWSPTSWHSFKIEQHPIYKDQKELERVKKELHSYPPLVFVGEARNLQERLAQAIDN
CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
KAFLLQGGDCAESFSQFNANRIRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSN
CEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCC
ATEILDNEEVLSYRGDIINGIPKKEREPNPERMLKAYHQSVATLNLIRAFAQGGLANLEQ
HHHHCCCHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIERTPILREVEFYTSHEALLLH
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEE
YEEPLVRKDSLTDQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASISEV
ECCCCHHHHCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCEEECCCCCHHHH
LELCDVLNPHNIKGRLNLIVRMGSKMIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEECC
SGVKTRAFDCVLDEVKSFFEIHRAEGSLASGVHLEMTGENVTECIGGSQAITEEGLSYHY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCEEE
YTQCDPRLNATQALELAFLIADMLKKQRV
EECCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNTTWSPTSWHSFKIEQHPIYKDQKELERVKKELHSYPPLVFVGEARNLQERLAQAIDN
CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCC
KAFLLQGGDCAESFSQFNANRIRDMFKVMMQMAIVLTFAGSIPIVKVGRIAGQFAKPRSN
CEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCC
ATEILDNEEVLSYRGDIINGIPKKEREPNPERMLKAYHQSVATLNLIRAFAQGGLANLEQ
HHHHCCCHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VHRFNLDFVKNNDFGQKYQQIADRITQALGFMQACGVEIERTPILREVEFYTSHEALLLH
HHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEE
YEEPLVRKDSLTDQFYDCSAHMLWIGERTRDPKGAHVEFLRGVCNPIGVKIGPNASISEV
ECCCCHHHHCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCEEECCCCCHHHH
LELCDVLNPHNIKGRLNLIVRMGSKMIKERLPKLLQGVLKEKRHILWSIDPMHGNTVKTS
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEECC
SGVKTRAFDCVLDEVKSFFEIHRAEGSLASGVHLEMTGENVTECIGGSQAITEEGLSYHY
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCEEE
YTQCDPRLNATQALELAFLIADMLKKQRV
EECCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953; 8760910 [H]