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The map label for this gene is exbD [C]

Identifier: 109946795

GI number: 109946795

Start: 147572

End: 147967

Strand: Reverse

Name: exbD [C]

Synonym: Hac_0172

Alternate gene names: 109946795

Gene position: 147967-147572 (Counterclockwise)

Preceding gene: 109946796

Following gene: 109946794

Centisome position: 9.52

GC content: 36.87

Gene sequence:

>396_bases
GTGAAAAAAGTAGAATCCATGAATGTGGTGCCTTTCATTGACATCATGCTTGTTTTGTTGGTGATCGTGCTCACAACTGC
GTCTTTTGTGCAAACTTCAAAGCTCCCTATTAGCATCCCTAAAGTGGATAAAGACAGCACTGACTCTAAAGATGTATTAG
ACAAAAAACAAGTGACCATCGCTATTTCTAATAAGGGTTCGTTTTATTTTGACAACAAAGAAATCAGCTTTAAAGATTTA
AAAAACAAGGTTTCCACTTTGGCCAAAGACACCCCCATTGTCTTGCAAGGCGATAAGCAAAGCAATTTGGATAGTTTTGT
CAAAGTGGTGGATTTGTTGCAAACCAACGATCTGAAGGAGCTTTACATTCTTGTTGAAGATAAAAAGAATCAATAA

Upstream 100 bases:

>100_bases
GTGAGAAAAAGCGAGATTTTAGTCACTAAATGGGATATTTTCCATAACCCAGTTGATACGCAATCTCATGAGATTTATAA
CAAAGCATAAGGATTAAGCG

Downstream 100 bases:

>100_bases
AGAGTGGTTTTAGTGAATTTTTAGCATTCTTTAGCTAAAATATGAGTTTATGTTTAATTTTTATAAAAAAAAGGGAGTTC
AATAATGAAACGCACTTACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPKVDKDSTDSKDVLDKKQVTIAISNKGSFYFDNKEISFKDL
KNKVSTLAKDTPIVLQGDKQSNLDSFVKVVDLLQTNDLKELYILVEDKKNQ

Sequences:

>Translated_131_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPKVDKDSTDSKDVLDKKQVTIAISNKGSFYFDNKEISFKDL
KNKVSTLAKDTPIVLQGDKQSNLDSFVKVVDLLQTNDLKELYILVEDKKNQ
>Mature_131_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPKVDKDSTDSKDVLDKKQVTIAISNKGSFYFDNKEISFKDL
KNKVSTLAKDTPIVLQGDKQSNLDSFVKVVDLLQTNDLKELYILVEDKKNQ

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14736; Mature: 14736

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPKVDKDSTDSKDVLDKKQVTI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHCCCCEEEE
AISNKGSFYFDNKEISFKDLKNKVSTLAKDTPIVLQGDKQSNLDSFVKVVDLLQTNDLKE
EEECCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEE
LYILVEDKKNQ
EEEEEECCCCC
>Mature Secondary Structure
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPKVDKDSTDSKDVLDKKQVTI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHCCCCEEEE
AISNKGSFYFDNKEISFKDLKNKVSTLAKDTPIVLQGDKQSNLDSFVKVVDLLQTNDLKE
EEECCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEE
LYILVEDKKNQ
EEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]