Click here to switch to the map view.

The map label for this gene is rnpA

Identifier: 109946794

GI number: 109946794

Start: 146932

End: 147393

Strand: Reverse

Name: rnpA

Synonym: Hac_0171

Alternate gene names: 109946794

Gene position: 147393-146932 (Counterclockwise)

Preceding gene: 109946795

Following gene: 109946793

Centisome position: 9.49

GC content: 36.8

Gene sequence:

>462_bases
ATGCTAGACGAGCTAAGGGCAGAAAAAAACTTTCCGTCTAAACCCTATGACTCTTTAAAAAATAAGAGCGAGTTTGATAG
GGTTTATCAAAGAGGTTTTAAAAAACACAACTCTTTTTTTTCGCTTTTTGTTTTAGACGCATCAAAAGAGCCGTCTCATT
TTAAAAACCCATTTTTTTGCAGGCTTAAAGACACAGAAAAATCTTGCTTGTTAGGTTTGAGCGTGTCTAAAAAAGTCGGT
AACGCCGTGAAACGCAACCTCATCAAACGCCGTTTGCGATCGCTTGTATTAAAACATGCCTCTCTTTGTCAAGGGTTCGC
TCTCGTGTTTGTCCCTAAAAAAGATTGCGAGCGTTTGGATTTTTTAACTTTGGAAAAACATTTCTTAGAAATGCTAATTT
CCATTAAAGGCTATATGAACAAAAAAGAAAAAGGAACGAACCACACCTATGCGAAACCATAA

Upstream 100 bases:

>100_bases
TCAATAATGAAACGCACTTACCAGCCACACAACACACCAAGGAAGCGAACCCATGGCTTTCTTGTGAGGATGAAAACTAA
AAACGGACGCAAGGTGATCA

Downstream 100 bases:

>100_bases
AACGCCTTTTTTGAATGCGATTTTTATAGTGTTAGTTAAAGGCTATCAGCGTTTTTTTTCAGTTTTCACTTTTTCAAGTT
GCCGGTTTTACCCCACTTGC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MLDELRAEKNFPSKPYDSLKNKSEFDRVYQRGFKKHNSFFSLFVLDASKEPSHFKNPFFCRLKDTEKSCLLGLSVSKKVG
NAVKRNLIKRRLRSLVLKHASLCQGFALVFVPKKDCERLDFLTLEKHFLEMLISIKGYMNKKEKGTNHTYAKP

Sequences:

>Translated_153_residues
MLDELRAEKNFPSKPYDSLKNKSEFDRVYQRGFKKHNSFFSLFVLDASKEPSHFKNPFFCRLKDTEKSCLLGLSVSKKVG
NAVKRNLIKRRLRSLVLKHASLCQGFALVFVPKKDCERLDFLTLEKHFLEMLISIKGYMNKKEKGTNHTYAKP
>Mature_153_residues
MLDELRAEKNFPSKPYDSLKNKSEFDRVYQRGFKKHNSFFSLFVLDASKEPSHFKNPFFCRLKDTEKSCLLGLSVSKKVG
NAVKRNLIKRRLRSLVLKHASLCQGFALVFVPKKDCERLDFLTLEKHFLEMLISIKGYMNKKEKGTNHTYAKP

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_HELAH (Q17ZA3)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_664022.1
- ProteinModelPortal:   Q17ZA3
- SMR:   Q17ZA3
- STRING:   Q17ZA3
- GeneID:   4177097
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_0171
- NMPDR:   fig|382638.8.peg.168
- eggNOG:   COG0594
- HOGENOM:   HBG501564
- OMA:   KHFLEML
- ProtClustDB:   CLSK496496
- BioCyc:   HACI382638:HAC_0171-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 17850; Mature: 17850

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDELRAEKNFPSKPYDSLKNKSEFDRVYQRGFKKHNSFFSLFVLDASKEPSHFKNPFFC
CCCCHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEE
RLKDTEKSCLLGLSVSKKVGNAVKRNLIKRRLRSLVLKHASLCQGFALVFVPKKDCERLD
EEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHH
FLTLEKHFLEMLISIKGYMNKKEKGTNHTYAKP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLDELRAEKNFPSKPYDSLKNKSEFDRVYQRGFKKHNSFFSLFVLDASKEPSHFKNPFFC
CCCCHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEE
RLKDTEKSCLLGLSVSKKVGNAVKRNLIKRRLRSLVLKHASLCQGFALVFVPKKDCERLD
EEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHH
FLTLEKHFLEMLISIKGYMNKKEKGTNHTYAKP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA