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The map label for this gene is ycjS [C]

Identifier: 110681016

GI number: 110681016

Start: 3746496

End: 3747632

Strand: Direct

Name: ycjS [C]

Synonym: RD1_3876

Alternate gene names: 110681016

Gene position: 3746496-3747632 (Clockwise)

Preceding gene: 110681015

Following gene: 110681017

Centisome position: 90.65

GC content: 59.54

Gene sequence:

>1137_bases
ATGACAAAACCCAAACTCAGAATTGGCATGGTCGGCTATGGTTTCATGGGGCGCACACATTCCAACGCTTTCCTGACCGC
CCCGCGTTTCTTTGATCTGCCCCGTCAGCCGGAACTCACCGCCATCTGCGCGCGCGACCGTGACCGCGCCGAAGCCTTCG
CGCAGAACTGGGGCTACGGCTCTGTTGAGACGGATTGGAAAGACCTCGTGGCGCGCGATGACATCGACCTGATCGACATC
GCGGCACCAAACAACATGCATATGGAGATTGCGATTGCCGCCGCAGAAGCCGGTAAGATGGTGATGTGTGAAAAGCCACT
GGGCCGGACCGCCGCTGAAAGCCAGAAGATGGTGGATGCGGTCGAAAAGGCAGGTGTTGCCAATATGGTCTGGTACAACT
ACCGCCGTATTCCTGCCGTGACCTTGGCCAAGCAGATGATCGACAACGGCGATCTGGGCCGGATTTTCCATTATCGCGCC
AAATTCCTGCAGGACTGGACGATTTCCGAAGACCTGCCGCAGGGGGGAGAAGGGCTCTGGCGGCTCGATAAATCCGTGGC
GGGCAGCGGTGTGACTGGCGATCTGCTGGCGCATTGCATTGATACGGCAATGTGGCTGAACGGGGGGATCGACAGCGTGA
CTGCCATGACGGAAACCTTCGTCAAGGAACGCGAACACGCGCTGACGGGCAAGGTCGAACCGGTTGGCATTGACGATGCC
TGCGCCTTCATGGGGCGGTTTGCCAATGGATCGCTGGCGACCTTTGAATCGACCCGCTACGCGCGGGGTCACAAGGCGCT
CTATACGCTTGAGATCAACGGCGAACATGGCTCGCTGTTCTGGGATCTGCATGATCTGCACCGCCTTGAGTACTTTGACC
ACCGCGATGACGGCAGGACACGGGGATGGCGGTCGGTACATGTGACCGATGGCGATCACCCTTACATGGACAAATGGTGG
GTGCCCGGCCTGTCCATCGGCTATGATGAAAGCTTCACGCATCAGGCGGCGGATTTCATCATGGGTCTTGACGGAATGCC
CGCCGCGCCAACCTTTGCCGACGCGCTGAAGACCGACAGGGTCACGGATGCCGTGCTGCGGTCTGCCGACAGCGGACGGT
GGGAAGCGGCAAGCTGA

Upstream 100 bases:

>100_bases
CCCAATGCGGTTCTAGAGGATCAGCAAACGTGGAACGACATTCTGGCCGCCATGATCGCGGTGCGCAACACCCATGGCTG
GCAGGCATAAGGAGGCAGAA

Downstream 100 bases:

>100_bases
TCCGAGGCCTGAGCCGGCCCGCGCCTTTGAGCCGATCGCGCGGGTCGACCGCGCACATCGGCGCGCTATCTTTTTCGAAA
GGACGACTTCGAAAGGGGAT

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MTKPKLRIGMVGYGFMGRTHSNAFLTAPRFFDLPRQPELTAICARDRDRAEAFAQNWGYGSVETDWKDLVARDDIDLIDI
AAPNNMHMEIAIAAAEAGKMVMCEKPLGRTAAESQKMVDAVEKAGVANMVWYNYRRIPAVTLAKQMIDNGDLGRIFHYRA
KFLQDWTISEDLPQGGEGLWRLDKSVAGSGVTGDLLAHCIDTAMWLNGGIDSVTAMTETFVKEREHALTGKVEPVGIDDA
CAFMGRFANGSLATFESTRYARGHKALYTLEINGEHGSLFWDLHDLHRLEYFDHRDDGRTRGWRSVHVTDGDHPYMDKWW
VPGLSIGYDESFTHQAADFIMGLDGMPAAPTFADALKTDRVTDAVLRSADSGRWEAAS

Sequences:

>Translated_378_residues
MTKPKLRIGMVGYGFMGRTHSNAFLTAPRFFDLPRQPELTAICARDRDRAEAFAQNWGYGSVETDWKDLVARDDIDLIDI
AAPNNMHMEIAIAAAEAGKMVMCEKPLGRTAAESQKMVDAVEKAGVANMVWYNYRRIPAVTLAKQMIDNGDLGRIFHYRA
KFLQDWTISEDLPQGGEGLWRLDKSVAGSGVTGDLLAHCIDTAMWLNGGIDSVTAMTETFVKEREHALTGKVEPVGIDDA
CAFMGRFANGSLATFESTRYARGHKALYTLEINGEHGSLFWDLHDLHRLEYFDHRDDGRTRGWRSVHVTDGDHPYMDKWW
VPGLSIGYDESFTHQAADFIMGLDGMPAAPTFADALKTDRVTDAVLRSADSGRWEAAS
>Mature_377_residues
TKPKLRIGMVGYGFMGRTHSNAFLTAPRFFDLPRQPELTAICARDRDRAEAFAQNWGYGSVETDWKDLVARDDIDLIDIA
APNNMHMEIAIAAAEAGKMVMCEKPLGRTAAESQKMVDAVEKAGVANMVWYNYRRIPAVTLAKQMIDNGDLGRIFHYRAK
FLQDWTISEDLPQGGEGLWRLDKSVAGSGVTGDLLAHCIDTAMWLNGGIDSVTAMTETFVKEREHALTGKVEPVGIDDAC
AFMGRFANGSLATFESTRYARGHKALYTLEINGEHGSLFWDLHDLHRLEYFDHRDDGRTRGWRSVHVTDGDHPYMDKWWV
PGLSIGYDESFTHQAADFIMGLDGMPAAPTFADALKTDRVTDAVLRSADSGRWEAAS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=273, Percent_Identity=23.4432234432234, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787574, Length=218, Percent_Identity=28.8990825688073, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081947, Length=211, Percent_Identity=29.3838862559242, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082405, Length=279, Percent_Identity=26.5232974910394, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581117, Length=274, Percent_Identity=26.2773722627737, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 42103; Mature: 41972

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPKLRIGMVGYGFMGRTHSNAFLTAPRFFDLPRQPELTAICARDRDRAEAFAQNWGYG
CCCCCEEEEEEEECCCCCCCCCEEEECCHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
SVETDWKDLVARDDIDLIDIAAPNNMHMEIAIAAAEAGKMVMCEKPLGRTAAESQKMVDA
CCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHH
VEKAGVANMVWYNYRRIPAVTLAKQMIDNGDLGRIFHYRAKFLQDWTISEDLPQGGEGLW
HHHCCCHHHEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
RLDKSVAGSGVTGDLLAHCIDTAMWLNGGIDSVTAMTETFVKEREHALTGKVEPVGIDDA
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
CAFMGRFANGSLATFESTRYARGHKALYTLEINGEHGSLFWDLHDLHRLEYFDHRDDGRT
HHHHHHCCCCCEEEECCCHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHCCCCCCCCC
RGWRSVHVTDGDHPYMDKWWVPGLSIGYDESFTHQAADFIMGLDGMPAAPTFADALKTDR
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VTDAVLRSADSGRWEAAS
HHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TKPKLRIGMVGYGFMGRTHSNAFLTAPRFFDLPRQPELTAICARDRDRAEAFAQNWGYG
CCCCEEEEEEEECCCCCCCCCEEEECCHHCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
SVETDWKDLVARDDIDLIDIAAPNNMHMEIAIAAAEAGKMVMCEKPLGRTAAESQKMVDA
CCCCCHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHH
VEKAGVANMVWYNYRRIPAVTLAKQMIDNGDLGRIFHYRAKFLQDWTISEDLPQGGEGLW
HHHCCCHHHEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
RLDKSVAGSGVTGDLLAHCIDTAMWLNGGIDSVTAMTETFVKEREHALTGKVEPVGIDDA
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
CAFMGRFANGSLATFESTRYARGHKALYTLEINGEHGSLFWDLHDLHRLEYFDHRDDGRT
HHHHHHCCCCCEEEECCCHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHCCCCCCCCC
RGWRSVHVTDGDHPYMDKWWVPGLSIGYDESFTHQAADFIMGLDGMPAAPTFADALKTDR
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VTDAVLRSADSGRWEAAS
HHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]