| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110681011
Identifier: 110681011
GI number: 110681011
Start: 3741118
End: 3742131
Strand: Direct
Name: 110681011
Synonym: RD1_3870
Alternate gene names: NA
Gene position: 3741118-3742131 (Clockwise)
Preceding gene: 110681009
Following gene: 110681012
Centisome position: 90.52
GC content: 63.02
Gene sequence:
>1014_bases ATGAAACGTATCGCACTCTTGTCGCTTTTGTCCTTGTCGCACGCATATGCCGCCGCGGCGGATATGCTGCCCGGTTATGA CCGGTTTGATCTGTTCGCGGCCCATCGCGCGACCCCGGTTGCAGCGTCGATCTGGTATCCTGCGGCCAATCCAACCTACC GCGCCCCTGTCGGGGACGGCCCGATTTTCGAGCCGAGCTTTGCCTTTATTGGTCCTGCGGTTGCGCAGGGCCAACACCCG CTTGTCCTGCTGTCCCACGGGTCGGGCGGCAATGCGCAAACGCTGGGCTGGCTGGCAAGCGGTCTGGTGGATCGCGGGGC GATGGTGCTTGCGGTCAATCATCCCGGCTCCACCAGCGGGGACAGCTCACCGCGCCGCTCTGTCGATCTTGAAGCGCGTG CCTCCGATCTGTCGGCAGCGCTGGACATGATCCTTGCGGATCCTGCCTTCGCGCGCCACATCGACCGGGACAGGATCAGC ACCGTTGGTTTCTCGCTTGGGGGGGCGACGTCGCTTGGGCTGGCCGGGGTGCGATTCATCGGCGCATGGCAGGATGAAAA CTGCGCAACGGAGCCAGAGGCCGCCGATTGCACCTTTTTCCAGCTCGGGGGTGTGCGGTTTGCCGACTATCCCGGCTTTG ACGCAGATACCCGCGACCGGCGCATCAGCGGCGCGGTGATCATCGACCCGGGGTTTGGCGGCTCCGCTGACCCTGCCAGC CTCGCCACTGCGCTGCCCGGCATCACGTTGATCAATCTGGGCGATGCGGATCGTCTGGCGGCGGCCGATGTAGGGCCAAA TGGCAATGATCTGGCCCGACGCTTGCCCGATGCCCGTTACATCGAAATCGCTTCAGCGCATCATTTCACCTTTTTGAGCA CCTGCAAAACGGGGGCCGTCCAAATGCTGGAAGAGGAAGGAGAAGACCCGATCTGCACAGACCCTGCCGGAGTTGACCGC GCAGCAACACATGCGCTTTTGATCGACGCAATTGCCGACGGGCTTGGATACTGA
Upstream 100 bases:
>100_bases TCCGAAATCCGGATCATGGCGACCTCAATCCCGAATATAGGACGCGGGCCGAGCGCGATCTGGCGCATCAGGGCAACAAC GTTCATCAACGGAGGTTCCC
Downstream 100 bases:
>100_bases CCCAAATACTGGAATGAAATACGGCAGTCTTGCGCCGGGGATTGTCCCGGCGATGGCACTCATTTCCGGTCAGGATCGCG GGCTTTTGACCGCTCTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: Dienelactone Hydrolase; Alpha/Beta Hydrolase; Dienelactone Hydrolase Protein; Hydrolase Putative Exported Protein; Lipoprotein
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MKRIALLSLLSLSHAYAAAADMLPGYDRFDLFAAHRATPVAASIWYPAANPTYRAPVGDGPIFEPSFAFIGPAVAQGQHP LVLLSHGSGGNAQTLGWLASGLVDRGAMVLAVNHPGSTSGDSSPRRSVDLEARASDLSAALDMILADPAFARHIDRDRIS TVGFSLGGATSLGLAGVRFIGAWQDENCATEPEAADCTFFQLGGVRFADYPGFDADTRDRRISGAVIIDPGFGGSADPAS LATALPGITLINLGDADRLAAADVGPNGNDLARRLPDARYIEIASAHHFTFLSTCKTGAVQMLEEEGEDPICTDPAGVDR AATHALLIDAIADGLGY
Sequences:
>Translated_337_residues MKRIALLSLLSLSHAYAAAADMLPGYDRFDLFAAHRATPVAASIWYPAANPTYRAPVGDGPIFEPSFAFIGPAVAQGQHP LVLLSHGSGGNAQTLGWLASGLVDRGAMVLAVNHPGSTSGDSSPRRSVDLEARASDLSAALDMILADPAFARHIDRDRIS TVGFSLGGATSLGLAGVRFIGAWQDENCATEPEAADCTFFQLGGVRFADYPGFDADTRDRRISGAVIIDPGFGGSADPAS LATALPGITLINLGDADRLAAADVGPNGNDLARRLPDARYIEIASAHHFTFLSTCKTGAVQMLEEEGEDPICTDPAGVDR AATHALLIDAIADGLGY >Mature_337_residues MKRIALLSLLSLSHAYAAAADMLPGYDRFDLFAAHRATPVAASIWYPAANPTYRAPVGDGPIFEPSFAFIGPAVAQGQHP LVLLSHGSGGNAQTLGWLASGLVDRGAMVLAVNHPGSTSGDSSPRRSVDLEARASDLSAALDMILADPAFARHIDRDRIS TVGFSLGGATSLGLAGVRFIGAWQDENCATEPEAADCTFFQLGGVRFADYPGFDADTRDRRISGAVIIDPGFGGSADPAS LATALPGITLINLGDADRLAAADVGPNGNDLARRLPDARYIEIASAHHFTFLSTCKTGAVQMLEEEGEDPICTDPAGVDR AATHALLIDAIADGLGY
Specific function: Unknown
COG id: COG4188
COG function: function code R; Predicted dienelactone hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35086; Mature: 35086
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIALLSLLSLSHAYAAAADMLPGYDRFDLFAAHRATPVAASIWYPAANPTYRAPVGDG CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCC PIFEPSFAFIGPAVAQGQHPLVLLSHGSGGNAQTLGWLASGLVDRGAMVLAVNHPGSTSG CCCCCCHHHHCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC DSSPRRSVDLEARASDLSAALDMILADPAFARHIDRDRISTVGFSLGGATSLGLAGVRFI CCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHCEECCCCCHHHHHHEEEE GAWQDENCATEPEAADCTFFQLGGVRFADYPGFDADTRDRRISGAVIIDPGFGGSADPAS ECCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCEECCEEEECCCCCCCCCHHH LATALPGITLINLGDADRLAAADVGPNGNDLARRLPDARYIEIASAHHFTFLSTCKTGAV HHHHCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHH QMLEEEGEDPICTDPAGVDRAATHALLIDAIADGLGY HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRIALLSLLSLSHAYAAAADMLPGYDRFDLFAAHRATPVAASIWYPAANPTYRAPVGDG CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCC PIFEPSFAFIGPAVAQGQHPLVLLSHGSGGNAQTLGWLASGLVDRGAMVLAVNHPGSTSG CCCCCCHHHHCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC DSSPRRSVDLEARASDLSAALDMILADPAFARHIDRDRISTVGFSLGGATSLGLAGVRFI CCCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHCEECCCCCHHHHHHEEEE GAWQDENCATEPEAADCTFFQLGGVRFADYPGFDADTRDRRISGAVIIDPGFGGSADPAS ECCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCEECCEEEECCCCCCCCCHHH LATALPGITLINLGDADRLAAADVGPNGNDLARRLPDARYIEIASAHHFTFLSTCKTGAV HHHHCCCEEEEECCCCCCEEEECCCCCCHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHH QMLEEEGEDPICTDPAGVDRAATHALLIDAIADGLGY HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA