Click here to switch to the map view.

The map label for this gene is 110681009

Identifier: 110681009

GI number: 110681009

Start: 3739372

End: 3739926

Strand: Direct

Name: 110681009

Synonym: RD1_3868

Alternate gene names: NA

Gene position: 3739372-3739926 (Clockwise)

Preceding gene: 110681008

Following gene: 110681011

Centisome position: 90.47

GC content: 60.18

Gene sequence:

>555_bases
ATGCAGACCGCAGCCGCAGTGGTCCGCCGCCATGACATCGAAATTGCCCGCCGCATCAGTGCCGCACTGGCTGTGGATCA
ATCACACCCGCCCACATTGCCCCCGGCAACCGTCCCAGCCTGTCACATCTTGCCTGAGCTACTGTCAGACCCGCAGTCCG
ATCTCATGTCGCATCTGGCCGGCTGTCGCGACGATTTGCATTGGCGGCAGGCGGGGTTTGGAAAACTGCCTGAGCCAGCG
GCGCAAAAGCTCGCGGTCACCGAATTGATCGGCCCAAACGGCATGTTTCCAGCCCCCGATATACGGATTGGCCTGTTGAT
ACAGACGGGTGGTTTTCACTACCCCAAACACCAGCACGCCGCAGCGGAGTTGTATCTGATCCTCAAAGGCACCGCTTGCT
GGGGCATCGAGGATGAACCGCCCGGCCCCCGGGCACCGGGTGATTTCGTGCACCATAAATCACAGCAGCCGCACAGGATC
ATCACGTCGGATGAGCCATTGCTCGCACTATGGGGCTGGGTCGGTGATATTGATGGCGCTTCTTACTCGGTCTGA

Upstream 100 bases:

>100_bases
TGGAAATGCATACCCGCATCCGCTCAGCGCTCATGCAACGCGCCGCATGACAGGCGCGCGCACACCCACTGCGCGCGCCG
CTGGCCGGCTGGTCGCATTC

Downstream 100 bases:

>100_bases
AAGATCGCCGCCTTGCATGATCCGCAGGCAAGCTGCGCCTATCACATGGATTTGCGCGATCTAGATATTTCTGTCACGGC
AGGTGCTGCATCCGCGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MQTAAAVVRRHDIEIARRISAALAVDQSHPPTLPPATVPACHILPELLSDPQSDLMSHLAGCRDDLHWRQAGFGKLPEPA
AQKLAVTELIGPNGMFPAPDIRIGLLIQTGGFHYPKHQHAAAELYLILKGTACWGIEDEPPGPRAPGDFVHHKSQQPHRI
ITSDEPLLALWGWVGDIDGASYSV

Sequences:

>Translated_184_residues
MQTAAAVVRRHDIEIARRISAALAVDQSHPPTLPPATVPACHILPELLSDPQSDLMSHLAGCRDDLHWRQAGFGKLPEPA
AQKLAVTELIGPNGMFPAPDIRIGLLIQTGGFHYPKHQHAAAELYLILKGTACWGIEDEPPGPRAPGDFVHHKSQQPHRI
ITSDEPLLALWGWVGDIDGASYSV
>Mature_184_residues
MQTAAAVVRRHDIEIARRISAALAVDQSHPPTLPPATVPACHILPELLSDPQSDLMSHLAGCRDDLHWRQAGFGKLPEPA
AQKLAVTELIGPNGMFPAPDIRIGLLIQTGGFHYPKHQHAAAELYLILKGTACWGIEDEPPGPRAPGDFVHHKSQQPHRI
ITSDEPLLALWGWVGDIDGASYSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19951; Mature: 19951

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTAAAVVRRHDIEIARRISAALAVDQSHPPTLPPATVPACHILPELLSDPQSDLMSHLA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
GCRDDLHWRQAGFGKLPEPAAQKLAVTELIGPNGMFPAPDIRIGLLIQTGGFHYPKHQHA
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
AAELYLILKGTACWGIEDEPPGPRAPGDFVHHKSQQPHRIITSDEPLLALWGWVGDIDGA
HEEEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCEEEECCCCCCCCC
SYSV
CCCC
>Mature Secondary Structure
MQTAAAVVRRHDIEIARRISAALAVDQSHPPTLPPATVPACHILPELLSDPQSDLMSHLA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
GCRDDLHWRQAGFGKLPEPAAQKLAVTELIGPNGMFPAPDIRIGLLIQTGGFHYPKHQHA
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
AAELYLILKGTACWGIEDEPPGPRAPGDFVHHKSQQPHRIITSDEPLLALWGWVGDIDGA
HEEEEEEEECCEEECCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCEEEECCCCCCCCC
SYSV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA