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The map label for this gene is ybiO [H]

Identifier: 110680882

GI number: 110680882

Start: 3605495

End: 3607777

Strand: Direct

Name: ybiO [H]

Synonym: RD1_3733

Alternate gene names: 110680882

Gene position: 3605495-3607777 (Clockwise)

Preceding gene: 110680881

Following gene: 110680889

Centisome position: 87.23

GC content: 56.46

Gene sequence:

>2283_bases
ATGCTCACTCGTTTCGCGCTGCCCTTAATTGTCTTTATTTCTTTGCTTTTCATCGCAATTGCGGCCCCCGGACCGGGACT
TCATGCACAAACAGTAGATGGTGAGGCTGCCGCGACACAGATGCCAGAACCGCTGTCGTCTGAAGCCATTCGCGAAATGG
TTGCGCGCATGTCCGATGATCAGGTGCGCGTCATGTTGTTGGAGCGGCTGGATGCGGTCGCGACGGAATCCACCGAGGAA
ACGGTTGAGTTTCAATCACTTGCCGTGACACTGACGCGGACATGGGAAGCGTTCTACACCCCCGTGGTCGAAGCGGTGCA
GCGCATTCCGATCCTCTTTGCACGCCAGATCGAAGCCTTCGCCACCTTTGCAGGCAGTTTCGGCGCAAGCGGACTGGCGG
TTTTATTCGGGCTTTTGGTCGGCATCCTTGCTCTGGGCTATGCGGCCGAACTCTTGGTCACCAAAACGTTGGAACGGCGC
ACAAAAAAGACGCTTGCGCAAGATACAGGTTCGCTGCGCGACACGCTGGTTTTTCTGGCCAAGCGCTTTGGCCGCGAAAT
TCTGGGCCTCGCCGTTTTCTACATCGTGATCCGCATCATCGGCGCGTCGTTCCTGAGCCCGCAGCAGATTGCCATCCTTG
CACCGGCCGTTCGTCTTTTGATCCTTATACCGAGGCTGATTGCGGCGCTGTCACGCTTTGCACTTGCGCCTTACGAGCCG
CAATATCGTCTGGTGAGTGTGAATGACCATTGGGCGAAATACCTGCATCGCAACCTGATCGGGTTGGGTCTGCTGGGCGG
ATTCACCATGTTTATCATCGGGTTCAACGCCCAGTTCGGCGTGCCCATCGGCGAGACGCGTCTGGGGTTCTGGCTCACGC
TGGCGCTGCACATCTACATTATTGTCATTGCCTGGACAGCCCGCGAAGGTCTTGTGGAAATGATGCTGGGCAATGACCCC
GACAGAACCAGATATGACGTTCAGGTGGCGCAATTTTATCCCATGTTTGCGATCTTTGTATCCGCCTTTATCTGGGTGGT
TTCGACGATCGTGGCAGGCTTTGGCAACATCGCGTTGCTGCTCAAGGCACCGCACTACACAACGATGTTCTGGCTGCTCA
TGGCTCCGATCATTGACACGATCATCCGCGGTCTGGTGCGCCACCTCCAACCGCCGATGATCGGTGAAGGCCCCGTGGCA
GAGCAGGCGTATAAGTCCAACAAACGCAGCCTGATCCGCATCGGGCGCGTGCTCGCCTTTGGGATGATCGTGCTGATTAT
CGCAAGTGCGTGGGAAATTGACCTGTCCAACGTGGGTGCAAACAGTGCAGGTGAACAGTTCATCGGCAATCTGGTTGAGT
TTCTGGTGATCTGTGCGATCGGCTACATCGTGTTCGAACTGATGTCGCTGTGGATCAACCGACGCCTTGCGCGCGAGCAG
TCCTCCAGCATGACATCTGATCAGGAAGCCGGTGAAGGCGGCGGCGCGGGTGGCTCGCGCCTCGCAACGGTTTTACCTCT
GGTTCTGATGACCGCGCAGATTGCGATTGGTGTGATCTTTGGGCTGCTTGCCATCGGCACGTTGGGTATTGATATCACGC
CCTTGCTGGCCGGGGCCGGGATTTTGGGTCTGGCCATCGGTTTTGGCGCGCAGAAACTCGTCACCGATATCGTGTCGGGC
GTTTTCTTTCTGATTGATGATGCTTTCCGCGTTGGTGAATATGTGGACGTGGGCGGGACAATGGGGGCGGTCGAGAAAAT
CTCGATCCGTTCCATGCAATTGCGCCACCATCGCGGCAACGTGCATACGATCCCCTATGGCAGCGTGGAAAAGGTGACGA
ACTTCAGCCGTGACTGGGTCATCATGAAACTGATGTTCACCGTGCCCTTTGACACCGACCCCAACAAGGTCAAGAAGATC
TTCAAGAAGATCGGCGCAGAGATGCTCGAAGACCCGCTCTTCAAGAACGATTTCCTTGAGCCTTTCAAAAGCCAAGGGGT
GTTTCAGTTTGACGATGTGGGCATTGTCATGCGCGGTAAGTTCATGGCAAAACCCGGCACGCAATTCACCATCCGCAAGG
AAATCTACAACCGTGTACGCAAGGAATTCGAGGCAAATGGCATCGAATTCGCCCGTCGCGAAGTGCGCGTTGCACTGCCC
GGTGTAGATGATCAGGACGGCATGACCGAAGAGCAACGCACCACCATCGAGGCCGCCGCAAGCGGTGCGGTTCAGGCACA
GGTGGAGCAGGAAGCAGCCGAGGCCGCAGCGGCCAAGAAATAG

Upstream 100 bases:

>100_bases
CAATCGGTGCAGTTAAACGCGCAGCATTTGTTTGCACTTACCGGTTGCAAAGAAAACAGATGATGCTTAAGGCCAAAAGA
GTAACCGCAGGAAGAATTGC

Downstream 100 bases:

>100_bases
CCAGCACTTGTCACGTCTGACTAAGAACCCGGCACATCATCTATCACATAACGCGTTGAAATCTCTGATTTCAGGCAGCG
TTATATGATCGGTGTATTTC

Product: mechanosensitive ion channel protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 760; Mature: 760

Protein sequence:

>760_residues
MLTRFALPLIVFISLLFIAIAAPGPGLHAQTVDGEAAATQMPEPLSSEAIREMVARMSDDQVRVMLLERLDAVATESTEE
TVEFQSLAVTLTRTWEAFYTPVVEAVQRIPILFARQIEAFATFAGSFGASGLAVLFGLLVGILALGYAAELLVTKTLERR
TKKTLAQDTGSLRDTLVFLAKRFGREILGLAVFYIVIRIIGASFLSPQQIAILAPAVRLLILIPRLIAALSRFALAPYEP
QYRLVSVNDHWAKYLHRNLIGLGLLGGFTMFIIGFNAQFGVPIGETRLGFWLTLALHIYIIVIAWTAREGLVEMMLGNDP
DRTRYDVQVAQFYPMFAIFVSAFIWVVSTIVAGFGNIALLLKAPHYTTMFWLLMAPIIDTIIRGLVRHLQPPMIGEGPVA
EQAYKSNKRSLIRIGRVLAFGMIVLIIASAWEIDLSNVGANSAGEQFIGNLVEFLVICAIGYIVFELMSLWINRRLAREQ
SSSMTSDQEAGEGGGAGGSRLATVLPLVLMTAQIAIGVIFGLLAIGTLGIDITPLLAGAGILGLAIGFGAQKLVTDIVSG
VFFLIDDAFRVGEYVDVGGTMGAVEKISIRSMQLRHHRGNVHTIPYGSVEKVTNFSRDWVIMKLMFTVPFDTDPNKVKKI
FKKIGAEMLEDPLFKNDFLEPFKSQGVFQFDDVGIVMRGKFMAKPGTQFTIRKEIYNRVRKEFEANGIEFARREVRVALP
GVDDQDGMTEEQRTTIEAAASGAVQAQVEQEAAEAAAAKK

Sequences:

>Translated_760_residues
MLTRFALPLIVFISLLFIAIAAPGPGLHAQTVDGEAAATQMPEPLSSEAIREMVARMSDDQVRVMLLERLDAVATESTEE
TVEFQSLAVTLTRTWEAFYTPVVEAVQRIPILFARQIEAFATFAGSFGASGLAVLFGLLVGILALGYAAELLVTKTLERR
TKKTLAQDTGSLRDTLVFLAKRFGREILGLAVFYIVIRIIGASFLSPQQIAILAPAVRLLILIPRLIAALSRFALAPYEP
QYRLVSVNDHWAKYLHRNLIGLGLLGGFTMFIIGFNAQFGVPIGETRLGFWLTLALHIYIIVIAWTAREGLVEMMLGNDP
DRTRYDVQVAQFYPMFAIFVSAFIWVVSTIVAGFGNIALLLKAPHYTTMFWLLMAPIIDTIIRGLVRHLQPPMIGEGPVA
EQAYKSNKRSLIRIGRVLAFGMIVLIIASAWEIDLSNVGANSAGEQFIGNLVEFLVICAIGYIVFELMSLWINRRLAREQ
SSSMTSDQEAGEGGGAGGSRLATVLPLVLMTAQIAIGVIFGLLAIGTLGIDITPLLAGAGILGLAIGFGAQKLVTDIVSG
VFFLIDDAFRVGEYVDVGGTMGAVEKISIRSMQLRHHRGNVHTIPYGSVEKVTNFSRDWVIMKLMFTVPFDTDPNKVKKI
FKKIGAEMLEDPLFKNDFLEPFKSQGVFQFDDVGIVMRGKFMAKPGTQFTIRKEIYNRVRKEFEANGIEFARREVRVALP
GVDDQDGMTEEQRTTIEAAASGAVQAQVEQEAAEAAAAKK
>Mature_760_residues
MLTRFALPLIVFISLLFIAIAAPGPGLHAQTVDGEAAATQMPEPLSSEAIREMVARMSDDQVRVMLLERLDAVATESTEE
TVEFQSLAVTLTRTWEAFYTPVVEAVQRIPILFARQIEAFATFAGSFGASGLAVLFGLLVGILALGYAAELLVTKTLERR
TKKTLAQDTGSLRDTLVFLAKRFGREILGLAVFYIVIRIIGASFLSPQQIAILAPAVRLLILIPRLIAALSRFALAPYEP
QYRLVSVNDHWAKYLHRNLIGLGLLGGFTMFIIGFNAQFGVPIGETRLGFWLTLALHIYIIVIAWTAREGLVEMMLGNDP
DRTRYDVQVAQFYPMFAIFVSAFIWVVSTIVAGFGNIALLLKAPHYTTMFWLLMAPIIDTIIRGLVRHLQPPMIGEGPVA
EQAYKSNKRSLIRIGRVLAFGMIVLIIASAWEIDLSNVGANSAGEQFIGNLVEFLVICAIGYIVFELMSLWINRRLAREQ
SSSMTSDQEAGEGGGAGGSRLATVLPLVLMTAQIAIGVIFGLLAIGTLGIDITPLLAGAGILGLAIGFGAQKLVTDIVSG
VFFLIDDAFRVGEYVDVGGTMGAVEKISIRSMQLRHHRGNVHTIPYGSVEKVTNFSRDWVIMKLMFTVPFDTDPNKVKKI
FKKIGAEMLEDPLFKNDFLEPFKSQGVFQFDDVGIVMRGKFMAKPGTQFTIRKEIYNRVRKEFEANGIEFARREVRVALP
GVDDQDGMTEEQRTTIEAAASGAVQAQVEQEAAEAAAAKK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=498, Percent_Identity=23.8955823293173, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI1789291, Length=266, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 83349; Mature: 83349

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRFALPLIVFISLLFIAIAAPGPGLHAQTVDGEAAATQMPEPLSSEAIREMVARMSDD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC
QVRVMLLERLDAVATESTEETVEFQSLAVTLTRTWEAFYTPVVEAVQRIPILFARQIEAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATFAGSFGASGLAVLFGLLVGILALGYAAELLVTKTLERRTKKTLAQDTGSLRDTLVFLA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KRFGREILGLAVFYIVIRIIGASFLSPQQIAILAPAVRLLILIPRLIAALSRFALAPYEP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QYRLVSVNDHWAKYLHRNLIGLGLLGGFTMFIIGFNAQFGVPIGETRLGFWLTLALHIYI
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCCCHHHHHHHHHHHHHHH
IVIAWTAREGLVEMMLGNDPDRTRYDVQVAQFYPMFAIFVSAFIWVVSTIVAGFGNIALL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LKAPHYTTMFWLLMAPIIDTIIRGLVRHLQPPMIGEGPVAEQAYKSNKRSLIRIGRVLAF
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
GMIVLIIASAWEIDLSNVGANSAGEQFIGNLVEFLVICAIGYIVFELMSLWINRRLAREQ
HHHHHHHHHHCCEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSSMTSDQEAGEGGGAGGSRLATVLPLVLMTAQIAIGVIFGLLAIGTLGIDITPLLAGAG
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
ILGLAIGFGAQKLVTDIVSGVFFLIDDAFRVGEYVDVGGTMGAVEKISIRSMQLRHHRGN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCC
VHTIPYGSVEKVTNFSRDWVIMKLMFTVPFDTDPNKVKKIFKKIGAEMLEDPLFKNDFLE
EEECCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
PFKSQGVFQFDDVGIVMRGKFMAKPGTQFTIRKEIYNRVRKEFEANGIEFARREVRVALP
HHHHCCCEEECCCCEEEECCEEECCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHEECC
GVDDQDGMTEEQRTTIEAAASGAVQAQVEQEAAEAAAAKK
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTRFALPLIVFISLLFIAIAAPGPGLHAQTVDGEAAATQMPEPLSSEAIREMVARMSDD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC
QVRVMLLERLDAVATESTEETVEFQSLAVTLTRTWEAFYTPVVEAVQRIPILFARQIEAF
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATFAGSFGASGLAVLFGLLVGILALGYAAELLVTKTLERRTKKTLAQDTGSLRDTLVFLA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
KRFGREILGLAVFYIVIRIIGASFLSPQQIAILAPAVRLLILIPRLIAALSRFALAPYEP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QYRLVSVNDHWAKYLHRNLIGLGLLGGFTMFIIGFNAQFGVPIGETRLGFWLTLALHIYI
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEEECCEECCCCCCHHHHHHHHHHHHHHH
IVIAWTAREGLVEMMLGNDPDRTRYDVQVAQFYPMFAIFVSAFIWVVSTIVAGFGNIALL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
LKAPHYTTMFWLLMAPIIDTIIRGLVRHLQPPMIGEGPVAEQAYKSNKRSLIRIGRVLAF
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHH
GMIVLIIASAWEIDLSNVGANSAGEQFIGNLVEFLVICAIGYIVFELMSLWINRRLAREQ
HHHHHHHHHHCCEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSSMTSDQEAGEGGGAGGSRLATVLPLVLMTAQIAIGVIFGLLAIGTLGIDITPLLAGAG
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH
ILGLAIGFGAQKLVTDIVSGVFFLIDDAFRVGEYVDVGGTMGAVEKISIRSMQLRHHRGN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCC
VHTIPYGSVEKVTNFSRDWVIMKLMFTVPFDTDPNKVKKIFKKIGAEMLEDPLFKNDFLE
EEECCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
PFKSQGVFQFDDVGIVMRGKFMAKPGTQFTIRKEIYNRVRKEFEANGIEFARREVRVALP
HHHHCCCEEECCCCEEEECCEEECCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHEECC
GVDDQDGMTEEQRTTIEAAASGAVQAQVEQEAAEAAAAKK
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]