| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is fahA
Identifier: 110680806
GI number: 110680806
Start: 3516406
End: 3517656
Strand: Direct
Name: fahA
Synonym: RD1_3653
Alternate gene names: NA
Gene position: 3516406-3517656 (Clockwise)
Preceding gene: 110680805
Following gene: 110680807
Centisome position: 85.08
GC content: 61.87
Gene sequence:
>1251_bases ATGACACAACTTCTCCGCTCTTGGGTCGAAAGCGCCAATGCGCCCGACACCGACTTCCCGCTCAACAACCTGCCCTATGG GGCTTTCCGTGTCGGTGACAGCGACCTGCATGCAGGTGTCGCGATTGGCGCGCGCATCCTCGATGTAACCGCCCTTGTAC AGGCCGGTCTGCTTGACCTGCCCGAAACCGGCGTTTTTGCCCGTGGCACATGGAATGACTTCATGGCACTGGGTTCGGAT GTCTGGGCCAGTTTCCGTGCGCACCTGACGGCCGCTCTGGCAGAAGGTGCGGCGCAGCAATCGGACCTTGAGCCACATTT GGTTGCCATGGCCGATGCCAAGCTCGAGATGCCCTTCATCGTGACGGAATTCACCGACTTCTATGCGGGACGTCACCATG CGTTCAACGTCGGATCGCTGTTCCGCGATCCGGCCAATGCCCTGCCGCCCAACTGGTTGCATATCCCGATCGGGTATAAC GGTCGCGCATCGTCGGTCGTGGTCAGCGGCACGGACATCACCCGCCCCAACGGACAGTTGAAAGCACCGGACGCGGAGAT GCCGGTGTTCGAGGCGTCCAAGCGCTTCGATCTGGAACTTGAGATGGGCGCGATTGTTGGCAAGCCCTCGAAAGGTCGCG TCAGCGTGCAAGAGGCCGACGACATGATCTTCGGCTACGTTCTTCTCAACGACTGGTCCGCGCGCGACATTCAGGCCTGG GAATACCAGCCGCTTGGCCCGTTTCAGGCCAAGGCAACCGCGACCACCATCAGCCCGTGGATCGTGACCAAAGCCGCACT TGAGCCCTTCCGCGCCTCGACCCCGCCGCGCGAAAAGGAACTGCTGCCATACCTCGCAGAAACGGGCCCGATGCTCTATG ATATCGACCTCGAAGTGGGCCTCGCCCCAGAAGGCAAATCGGAAACCATCCTGTCGCGCACGAATTACAACGTGATGTAT TACTCCGCAGCCCAGCAACTGACCCACCACACCACCAGCGGCTGCCCGATGCGGGTTGGCGATCTGCTCGGTTCCGGCAC GATTTCCGGCCCTGAAAAGGAAAACCGCGGCAGCCTGCTGGAACTGAGCTGGGCGGGTAAGGAACCGCTGACGCTGGACA CGGGCGAGACCCGCACGTTTCTGGAAGACGGAGACACGCTGACCCTGCGCGGTGCCGCCAAAGGCGACGGATACCGGATC GGCTTTGGCGACTGCACAGGCACCCTGCGCCCAGCATCCGCGCTGGATTGA
Upstream 100 bases:
>100_bases TTTGCCCGCCTGCTTGAGATCGAAGAACAGGCCCTGAAACTGCCGGCTTTCGATGCCGCACGCCCCGAAAACCAGCCAGA CGCCACCTGAAGGACAAACG
Downstream 100 bases:
>100_bases AACGACGCGCCGACCCGCGCGACGCCGTCCGACGAGACAGTGCTCGGTGGTCGCAAGCCCACCGCGCGCTACCCGTTTAA CAAACCCGCATGACGCCGAC
Product: fumarylacetoacetase
Products: acetoacetate; fumarate
Alternate protein names: Fumarylacetoacetate Hydrolase; Hydroxylase; 2-Hydroxyhepta-2 4-Diene-1 7-Dioate Isomerase; Fumarylacetoacetate Hydrolase Family Protein; Fumarylacetoacetase Hydrolase; LOW QUALITY PROTEIN Fumarylacetoacetase
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MTQLLRSWVESANAPDTDFPLNNLPYGAFRVGDSDLHAGVAIGARILDVTALVQAGLLDLPETGVFARGTWNDFMALGSD VWASFRAHLTAALAEGAAQQSDLEPHLVAMADAKLEMPFIVTEFTDFYAGRHHAFNVGSLFRDPANALPPNWLHIPIGYN GRASSVVVSGTDITRPNGQLKAPDAEMPVFEASKRFDLELEMGAIVGKPSKGRVSVQEADDMIFGYVLLNDWSARDIQAW EYQPLGPFQAKATATTISPWIVTKAALEPFRASTPPREKELLPYLAETGPMLYDIDLEVGLAPEGKSETILSRTNYNVMY YSAAQQLTHHTTSGCPMRVGDLLGSGTISGPEKENRGSLLELSWAGKEPLTLDTGETRTFLEDGDTLTLRGAAKGDGYRI GFGDCTGTLRPASALD
Sequences:
>Translated_416_residues MTQLLRSWVESANAPDTDFPLNNLPYGAFRVGDSDLHAGVAIGARILDVTALVQAGLLDLPETGVFARGTWNDFMALGSD VWASFRAHLTAALAEGAAQQSDLEPHLVAMADAKLEMPFIVTEFTDFYAGRHHAFNVGSLFRDPANALPPNWLHIPIGYN GRASSVVVSGTDITRPNGQLKAPDAEMPVFEASKRFDLELEMGAIVGKPSKGRVSVQEADDMIFGYVLLNDWSARDIQAW EYQPLGPFQAKATATTISPWIVTKAALEPFRASTPPREKELLPYLAETGPMLYDIDLEVGLAPEGKSETILSRTNYNVMY YSAAQQLTHHTTSGCPMRVGDLLGSGTISGPEKENRGSLLELSWAGKEPLTLDTGETRTFLEDGDTLTLRGAAKGDGYRI GFGDCTGTLRPASALD >Mature_415_residues TQLLRSWVESANAPDTDFPLNNLPYGAFRVGDSDLHAGVAIGARILDVTALVQAGLLDLPETGVFARGTWNDFMALGSDV WASFRAHLTAALAEGAAQQSDLEPHLVAMADAKLEMPFIVTEFTDFYAGRHHAFNVGSLFRDPANALPPNWLHIPIGYNG RASSVVVSGTDITRPNGQLKAPDAEMPVFEASKRFDLELEMGAIVGKPSKGRVSVQEADDMIFGYVLLNDWSARDIQAWE YQPLGPFQAKATATTISPWIVTKAALEPFRASTPPREKELLPYLAETGPMLYDIDLEVGLAPEGKSETILSRTNYNVMYY SAAQQLTHHTTSGCPMRVGDLLGSGTISGPEKENRGSLLELSWAGKEPLTLDTGETRTFLEDGDTLTLRGAAKGDGYRIG FGDCTGTLRPASALD
Specific function: Unknown
COG id: COG0179
COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4557587, Length=409, Percent_Identity=48.4107579462103, Blast_Score=387, Evalue=1e-108, Organism=Caenorhabditis elegans, GI17568863, Length=411, Percent_Identity=48.9051094890511, Blast_Score=380, Evalue=1e-106, Organism=Drosophila melanogaster, GI24657182, Length=406, Percent_Identity=46.0591133004926, Blast_Score=364, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.7.1.2
Molecular weight: Translated: 45006; Mature: 44875
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQLLRSWVESANAPDTDFPLNNLPYGAFRVGDSDLHAGVAIGARILDVTALVQAGLLDL CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC PETGVFARGTWNDFMALGSDVWASFRAHLTAALAEGAAQQSDLEPHLVAMADAKLEMPFI CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCCCCEE VTEFTDFYAGRHHAFNVGSLFRDPANALPPNWLHIPIGYNGRASSVVVSGTDITRPNGQL EEEHHHHHCCCCCEEEHHHHHCCCHHCCCCCEEEEECCCCCCCCEEEEECCEEECCCCCE KAPDAEMPVFEASKRFDLELEMGAIVGKPSKGRVSVQEADDMIFGYVLLNDWSARDIQAW ECCCCCCCCCCCCCCEEEEEEECEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCE EYQPLGPFQAKATATTISPWIVTKAALEPFRASTPPREKELLPYLAETGPMLYDIDLEVG ECCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE LAPEGKSETILSRTNYNVMYYSAAQQLTHHTTSGCPMRVGDLLGSGTISGPEKENRGSLL CCCCCCCCEEEEECCCEEEEEEHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEE ELSWAGKEPLTLDTGETRTFLEDGDTLTLRGAAKGDGYRIGFGDCTGTLRPASALD EEEECCCCCEEECCCCCEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCHHCCC >Mature Secondary Structure TQLLRSWVESANAPDTDFPLNNLPYGAFRVGDSDLHAGVAIGARILDVTALVQAGLLDL HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCC PETGVFARGTWNDFMALGSDVWASFRAHLTAALAEGAAQQSDLEPHLVAMADAKLEMPFI CCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCCCCEE VTEFTDFYAGRHHAFNVGSLFRDPANALPPNWLHIPIGYNGRASSVVVSGTDITRPNGQL EEEHHHHHCCCCCEEEHHHHHCCCHHCCCCCEEEEECCCCCCCCEEEEECCEEECCCCCE KAPDAEMPVFEASKRFDLELEMGAIVGKPSKGRVSVQEADDMIFGYVLLNDWSARDIQAW ECCCCCCCCCCCCCCEEEEEEECEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCE EYQPLGPFQAKATATTISPWIVTKAALEPFRASTPPREKELLPYLAETGPMLYDIDLEVG ECCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE LAPEGKSETILSRTNYNVMYYSAAQQLTHHTTSGCPMRVGDLLGSGTISGPEKENRGSLL CCCCCCCCEEEEECCCEEEEEEHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEE ELSWAGKEPLTLDTGETRTFLEDGDTLTLRGAAKGDGYRIGFGDCTGTLRPASALD EEEECCCCCEEECCCCCEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 4-fumarylacetoacetate; H2O
Specific reaction: 4-fumarylacetoacetate + H2O = acetoacetate + fumarate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA