Click here to switch to the map view.

The map label for this gene is ycjP [C]

Identifier: 110680777

GI number: 110680777

Start: 3483838

End: 3484731

Strand: Direct

Name: ycjP [C]

Synonym: RD1_3620

Alternate gene names: 110680777

Gene position: 3483838-3484731 (Clockwise)

Preceding gene: 110680776

Following gene: 110680778

Centisome position: 84.29

GC content: 56.15

Gene sequence:

>894_bases
TTGATGGAACAGTCCCGGCCCTTCATCATCGCGCGCTACACGGCGGCCATCCTGATCGTGATGATTTTCATGTTTCCGAT
CTTCTGGTTCGCGCTGACCTCGATCAAACCGATTTCGGCGGTTTTCGACAAAGATGGCGTGATCTGGTTCGATTTCGTGC
CGACCATGGAAAACTACCGCGTGACCCTGCTGGGCGAATCCTCGATTGACGTGAACCAGAACACCCGGTCGGATTTCGGC
ACGAGTGGGGGAAATTCCTATGACGGGCGCGGTTCGATCCTGTCCTCGATCATCGTGGCTGTCGGCTCGACGATTCTGTC
GGCCGGGATGGGTATGCTGGCCGCTTACGGCCTGTCCCGCATGAATTTCCGAGGCTCGCAAGGCCTTTTGAACTGGATTC
TGTCACAGCGGTTTCTGCCGCCCATCGCGATCATCATTCCCCTCGTCTTCATCTTTCACGACATGGGGCTGCGCGACACC
TATGTGGGCCTGATCATTGCCCATACGCTGATCAATTTACCCATCGCCGTGCTTTTGATGAAATCCTTCATCGACGACAT
TCCGGTCGATATCGACCATGCCGCCATGATCGACGGTGCGACGCGCTGGCAGGTGTTCTGGAAAGTGATCCTGCCGATGT
CAAAAGGCGGTCTGGCGGCCACCGCGGTGCTCTGTTTCATTTTCTCCTGGACCGAATTTCTTCTGGCCCTGTTCCTCACA
AGCTCGATCCGCACGATCCCGGTCAAAATCACCACCTTCGTGACATCCACGGGGAGCGAGTGGGGATATATTTCGGCGCT
TGGGACATCGGCCATCATACCGGGCTTTATCTTCATCCTGCTCGTTCAGAACCATCTGGTGCGCGGGCTGACGATGGGGG
CAATAAAGGACTGA

Upstream 100 bases:

>100_bases
AGAGCGCGAATTTCCCCTTCGCGTCCACCGTTGCGATCTTTACGCTTCTGGTGGTGCTGATCGTTGCCAATGTCTTCATT
AAAGTCTTCAAGGTACGCTT

Downstream 100 bases:

>100_bases
TCTTACGAACCCTCATTCGAGGGCAAAATACGGCTCAAATTATATCAGGGAGGTATCCAAATGAGCTTCAGGACCCACGA
CAAGCAGCGCTTCATCATAG

Product: sugar ABC transporter permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MMEQSRPFIIARYTAAILIVMIFMFPIFWFALTSIKPISAVFDKDGVIWFDFVPTMENYRVTLLGESSIDVNQNTRSDFG
TSGGNSYDGRGSILSSIIVAVGSTILSAGMGMLAAYGLSRMNFRGSQGLLNWILSQRFLPPIAIIIPLVFIFHDMGLRDT
YVGLIIAHTLINLPIAVLLMKSFIDDIPVDIDHAAMIDGATRWQVFWKVILPMSKGGLAATAVLCFIFSWTEFLLALFLT
SSIRTIPVKITTFVTSTGSEWGYISALGTSAIIPGFIFILLVQNHLVRGLTMGAIKD

Sequences:

>Translated_297_residues
MMEQSRPFIIARYTAAILIVMIFMFPIFWFALTSIKPISAVFDKDGVIWFDFVPTMENYRVTLLGESSIDVNQNTRSDFG
TSGGNSYDGRGSILSSIIVAVGSTILSAGMGMLAAYGLSRMNFRGSQGLLNWILSQRFLPPIAIIIPLVFIFHDMGLRDT
YVGLIIAHTLINLPIAVLLMKSFIDDIPVDIDHAAMIDGATRWQVFWKVILPMSKGGLAATAVLCFIFSWTEFLLALFLT
SSIRTIPVKITTFVTSTGSEWGYISALGTSAIIPGFIFILLVQNHLVRGLTMGAIKD
>Mature_297_residues
MMEQSRPFIIARYTAAILIVMIFMFPIFWFALTSIKPISAVFDKDGVIWFDFVPTMENYRVTLLGESSIDVNQNTRSDFG
TSGGNSYDGRGSILSSIIVAVGSTILSAGMGMLAAYGLSRMNFRGSQGLLNWILSQRFLPPIAIIIPLVFIFHDMGLRDT
YVGLIIAHTLINLPIAVLLMKSFIDDIPVDIDHAAMIDGATRWQVFWKVILPMSKGGLAATAVLCFIFSWTEFLLALFLT
SSIRTIPVKITTFVTSTGSEWGYISALGTSAIIPGFIFILLVQNHLVRGLTMGAIKD

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=289, Percent_Identity=29.4117647058824, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790464, Length=209, Percent_Identity=30.622009569378, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789860, Length=295, Percent_Identity=25.7627118644068, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32708; Mature: 32708

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEQSRPFIIARYTAAILIVMIFMFPIFWFALTSIKPISAVFDKDGVIWFDFVPTMENYR
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCE
VTLLGESSIDVNQNTRSDFGTSGGNSYDGRGSILSSIIVAVGSTILSAGMGMLAAYGLSR
EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNFRGSQGLLNWILSQRFLPPIAIIIPLVFIFHDMGLRDTYVGLIIAHTLINLPIAVLLM
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KSFIDDIPVDIDHAAMIDGATRWQVFWKVILPMSKGGLAATAVLCFIFSWTEFLLALFLT
HHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSIRTIPVKITTFVTSTGSEWGYISALGTSAIIPGFIFILLVQNHLVRGLTMGAIKD
HCCCEEEEEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMEQSRPFIIARYTAAILIVMIFMFPIFWFALTSIKPISAVFDKDGVIWFDFVPTMENYR
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCCCE
VTLLGESSIDVNQNTRSDFGTSGGNSYDGRGSILSSIIVAVGSTILSAGMGMLAAYGLSR
EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNFRGSQGLLNWILSQRFLPPIAIIIPLVFIFHDMGLRDTYVGLIIAHTLINLPIAVLLM
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KSFIDDIPVDIDHAAMIDGATRWQVFWKVILPMSKGGLAATAVLCFIFSWTEFLLALFLT
HHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSIRTIPVKITTFVTSTGSEWGYISALGTSAIIPGFIFILLVQNHLVRGLTMGAIKD
HCCCEEEEEEEEEEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]