Click here to switch to the map view.

The map label for this gene is xylB [H]

Identifier: 110680774

GI number: 110680774

Start: 3480139

End: 3481680

Strand: Direct

Name: xylB [H]

Synonym: RD1_3617

Alternate gene names: 110680774

Gene position: 3480139-3481680 (Clockwise)

Preceding gene: 110680773

Following gene: 110680775

Centisome position: 84.2

GC content: 60.57

Gene sequence:

>1542_bases
ATGACAGAGCATCCTGAAATCAAAGACTGCGTGATTGGTATCGACTCATCGACCACCGCGACCAAGGCGATTGCATGGAC
GCGCGAGGGGAAGTTCGTGGCCGAAGGGCGGTGTCCCATCGCGCTTTCCAATCCCAAACCGGGACATTTTGAGCAAGACG
CGCAAGACTGGTGGTTGAGCACGAAAGAGGCGCTGCGCGAGGTGACGGGCCAGATTGATGCGCGCCGCGTTGCAGCCGTT
GCGGTTTCAAATCAACGCGAGACCTTTTGCGTTTTTGGCGAGGATGAAAAACCGTTACTGCCCGGCAGCCTGTGGCTTGA
TGAACGCGCGACAGGCCAGCAGCGCCGCTTTGCCGAAAAACACGGCGCGGAGAAAATTCGCGCGCTGTCCGGCAAGCCGG
TGGATGTCATTGTCCCGATCTATCGCATGTTGTGGATCGCCGAAAACCACCCGGATATCTATGCCCGGATCCGCCATTTC
GCGGATGTGAATTGCTTTATCACCCGCAATCTGACGGGGCGTTGGGCGACATCGCTGGCATCGGCCGACCCGATGGGCAT
GGTGGATATGAAGAACGGGTGCTGGTCGCAGGAATTGCTGGACGCGGCGGGCATTGACGCGGCGATCCTGCCTGACTTGT
ATCGCCCCGGTGCTGTGATCGGACCTCTCACGGCGCGAGCCGCAGAGGCAACCGGGCTGCCTGCGGGTATTCCGGTCGTC
GCGGGCGGCGGGGATGGTCAATGCGCCGCCACCGGCACCGGAACCGTTGAACCCGGCATCGCCTATATGAACCTCGGCAC
GGCGCTGGTTGCGGGGTGCTACTCCGCCGATTACGCACATGCGCAGGCGTTTCGCACGGAAATCGCGGTCGCCGACCAAG
GCTATATCTATGAAACGCTGCTCAAGGCCGGCACCTTCCTGATCGACTGGATGACGCAGCAGTTGGCGCAGGTCAAAAAA
GAGGAACAATCAGCCTTCTTGACGGCCCTCGAAAAAGAGGCACAACAAAGCCCGATCGGCGCGCATGGGCTGGTGGTGCT
GCCCTATTGGCAAGGCTCGATGACGCCAAACTGGGACAGCGATGCGCGCGGCGTGATCGCCGGTCTTTCCGGATCGACAC
AGACGGGCGACATTTACCGCGCCATTCTGGAAGGCCTCGCACTTGATACCGCAATGGCCTTTGAAAAAGCGCGCGAGGCG
ACGGGCCGACGGCTCAACAAGGTGGTCGCGATTGGTGGCGGCTCTTCTTCCAACCTGTTTTTGTCGATCATGGCCGATGC
GCTGAACGTGGAGGTGCTGCAATCGGATGTGCGCGAGGCGTCATCTCTCGGGGCGGCAATGGCGGCGGCGCAGGGCGCCG
GGTGGTATCCAACCCTGTCAGAGGCCTCTCTTGCCATGAAAGGTGAGATCGTGAAAACCGTGCAGCCCGACCCCGAACGC
GTCAAACGCTACCGGGAATTGCGCGGGCATTATGAAAAACTGTGGCCGCTTCTGTCTGACTGGAACGCCGGGCTGCGCAA
GTTCACCAAGGAACAACAATGA

Upstream 100 bases:

>100_bases
CGACGCGGCAGAAATTCTGAAGCCAAGGGATGGATAATGTCGCAGAGGCATGCGCGCAGGCGGTGCGTCAGCGACTGTTG
GAAACGGTGCGGCGAGGATT

Downstream 100 bases:

>100_bases
GTTATGCCGCCGTTTTATCCACCGAGGCCGCCTTTGATCGCTATGAACAAATCCGGGATCGCTTGCCGGGCGCGCAGTTC
TGCGCAGAACCGCAGGCCTG

Product: xylulose kinase, putative

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MTEHPEIKDCVIGIDSSTTATKAIAWTREGKFVAEGRCPIALSNPKPGHFEQDAQDWWLSTKEALREVTGQIDARRVAAV
AVSNQRETFCVFGEDEKPLLPGSLWLDERATGQQRRFAEKHGAEKIRALSGKPVDVIVPIYRMLWIAENHPDIYARIRHF
ADVNCFITRNLTGRWATSLASADPMGMVDMKNGCWSQELLDAAGIDAAILPDLYRPGAVIGPLTARAAEATGLPAGIPVV
AGGGDGQCAATGTGTVEPGIAYMNLGTALVAGCYSADYAHAQAFRTEIAVADQGYIYETLLKAGTFLIDWMTQQLAQVKK
EEQSAFLTALEKEAQQSPIGAHGLVVLPYWQGSMTPNWDSDARGVIAGLSGSTQTGDIYRAILEGLALDTAMAFEKAREA
TGRRLNKVVAIGGGSSSNLFLSIMADALNVEVLQSDVREASSLGAAMAAAQGAGWYPTLSEASLAMKGEIVKTVQPDPER
VKRYRELRGHYEKLWPLLSDWNAGLRKFTKEQQ

Sequences:

>Translated_513_residues
MTEHPEIKDCVIGIDSSTTATKAIAWTREGKFVAEGRCPIALSNPKPGHFEQDAQDWWLSTKEALREVTGQIDARRVAAV
AVSNQRETFCVFGEDEKPLLPGSLWLDERATGQQRRFAEKHGAEKIRALSGKPVDVIVPIYRMLWIAENHPDIYARIRHF
ADVNCFITRNLTGRWATSLASADPMGMVDMKNGCWSQELLDAAGIDAAILPDLYRPGAVIGPLTARAAEATGLPAGIPVV
AGGGDGQCAATGTGTVEPGIAYMNLGTALVAGCYSADYAHAQAFRTEIAVADQGYIYETLLKAGTFLIDWMTQQLAQVKK
EEQSAFLTALEKEAQQSPIGAHGLVVLPYWQGSMTPNWDSDARGVIAGLSGSTQTGDIYRAILEGLALDTAMAFEKAREA
TGRRLNKVVAIGGGSSSNLFLSIMADALNVEVLQSDVREASSLGAAMAAAQGAGWYPTLSEASLAMKGEIVKTVQPDPER
VKRYRELRGHYEKLWPLLSDWNAGLRKFTKEQQ
>Mature_512_residues
TEHPEIKDCVIGIDSSTTATKAIAWTREGKFVAEGRCPIALSNPKPGHFEQDAQDWWLSTKEALREVTGQIDARRVAAVA
VSNQRETFCVFGEDEKPLLPGSLWLDERATGQQRRFAEKHGAEKIRALSGKPVDVIVPIYRMLWIAENHPDIYARIRHFA
DVNCFITRNLTGRWATSLASADPMGMVDMKNGCWSQELLDAAGIDAAILPDLYRPGAVIGPLTARAAEATGLPAGIPVVA
GGGDGQCAATGTGTVEPGIAYMNLGTALVAGCYSADYAHAQAFRTEIAVADQGYIYETLLKAGTFLIDWMTQQLAQVKKE
EQSAFLTALEKEAQQSPIGAHGLVVLPYWQGSMTPNWDSDARGVIAGLSGSTQTGDIYRAILEGLALDTAMAFEKAREAT
GRRLNKVVAIGGGSSSNLFLSIMADALNVEVLQSDVREASSLGAAMAAAQGAGWYPTLSEASLAMKGEIVKTVQPDPERV
KRYRELRGHYEKLWPLLSDWNAGLRKFTKEQQ

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Homo sapiens, GI42794763, Length=457, Percent_Identity=22.5382932166302, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI189409120, Length=457, Percent_Identity=22.9759299781182, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI4504007, Length=457, Percent_Identity=22.9759299781182, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI41393575, Length=450, Percent_Identity=22.4444444444444, Blast_Score=102, Evalue=8e-22,
Organism=Escherichia coli, GI1789138, Length=505, Percent_Identity=25.9405940594059, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1790361, Length=506, Percent_Identity=26.2845849802372, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787789, Length=517, Percent_Identity=26.3056092843327, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789987, Length=502, Percent_Identity=27.4900398406374, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1790005, Length=514, Percent_Identity=23.7354085603113, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1789168, Length=470, Percent_Identity=25.1063829787234, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1786249, Length=312, Percent_Identity=24.3589743589744, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17535599, Length=454, Percent_Identity=23.7885462555066, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24655555, Length=499, Percent_Identity=25.0501002004008, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24655560, Length=499, Percent_Identity=25.0501002004008, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24655570, Length=499, Percent_Identity=25.0501002004008, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24655574, Length=499, Percent_Identity=25.0501002004008, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24655565, Length=499, Percent_Identity=25.0501002004008, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI17864214, Length=509, Percent_Identity=23.7721021611002, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24654573, Length=453, Percent_Identity=24.0618101545254, Blast_Score=111, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24657106, Length=522, Percent_Identity=24.3295019157088, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24657102, Length=522, Percent_Identity=24.3295019157088, Blast_Score=102, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 55528; Mature: 55396

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEHPEIKDCVIGIDSSTTATKAIAWTREGKFVAEGRCPIALSNPKPGHFEQDAQDWWLS
CCCCCCCCCEEEECCCCCCHHHEEEEECCCCEEECCCCCEEECCCCCCCCCCCHHHHHHH
TKEALREVTGQIDARRVAAVAVSNQRETFCVFGEDEKPLLPGSLWLDERATGQQRRFAEK
HHHHHHHHHCCCCHHHEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHH
HGAEKIRALSGKPVDVIVPIYRMLWIAENHPDIYARIRHFADVNCFITRNLTGRWATSLA
HCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHC
SADPMGMVDMKNGCWSQELLDAAGIDAAILPDLYRPGAVIGPLTARAAEATGLPAGIPVV
CCCCCCEEECCCCCCHHHHHHHCCCCHHHHHHHCCCCCEECCCHHHHHHCCCCCCCCEEE
AGGGDGQCAATGTGTVEPGIAYMNLGTALVAGCYSADYAHAQAFRTEIAVADQGYIYETL
ECCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHEEECCCCHHHHHH
LKAGTFLIDWMTQQLAQVKKEEQSAFLTALEKEAQQSPIGAHGLVVLPYWQGSMTPNWDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
DARGVIAGLSGSTQTGDIYRAILEGLALDTAMAFEKAREATGRRLNKVVAIGGGSSSNLF
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCEE
LSIMADALNVEVLQSDVREASSLGAAMAAAQGAGWYPTLSEASLAMKGEIVKTVQPDPER
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCCCHHH
VKRYRELRGHYEKLWPLLSDWNAGLRKFTKEQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEHPEIKDCVIGIDSSTTATKAIAWTREGKFVAEGRCPIALSNPKPGHFEQDAQDWWLS
CCCCCCCCEEEECCCCCCHHHEEEEECCCCEEECCCCCEEECCCCCCCCCCCHHHHHHH
TKEALREVTGQIDARRVAAVAVSNQRETFCVFGEDEKPLLPGSLWLDERATGQQRRFAEK
HHHHHHHHHCCCCHHHEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHH
HGAEKIRALSGKPVDVIVPIYRMLWIAENHPDIYARIRHFADVNCFITRNLTGRWATSLA
HCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHC
SADPMGMVDMKNGCWSQELLDAAGIDAAILPDLYRPGAVIGPLTARAAEATGLPAGIPVV
CCCCCCEEECCCCCCHHHHHHHCCCCHHHHHHHCCCCCEECCCHHHHHHCCCCCCCCEEE
AGGGDGQCAATGTGTVEPGIAYMNLGTALVAGCYSADYAHAQAFRTEIAVADQGYIYETL
ECCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHEEECCCCHHHHHH
LKAGTFLIDWMTQQLAQVKKEEQSAFLTALEKEAQQSPIGAHGLVVLPYWQGSMTPNWDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
DARGVIAGLSGSTQTGDIYRAILEGLALDTAMAFEKAREATGRRLNKVVAIGGGSSSNLF
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCEE
LSIMADALNVEVLQSDVREASSLGAAMAAAQGAGWYPTLSEASLAMKGEIVKTVQPDPER
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCCCHHH
VKRYRELRGHYEKLWPLLSDWNAGLRKFTKEQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 2994009 [H]