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The map label for this gene is nagD [H]

Identifier: 110680775

GI number: 110680775

Start: 3481677

End: 3482582

Strand: Direct

Name: nagD [H]

Synonym: RD1_3618

Alternate gene names: 110680775

Gene position: 3481677-3482582 (Clockwise)

Preceding gene: 110680774

Following gene: 110680776

Centisome position: 84.24

GC content: 62.47

Gene sequence:

>906_bases
ATGAGTTATGCCGCCGTTTTATCCACCGAGGCCGCCTTTGATCGCTATGAACAAATCCGGGATCGCTTGCCGGGCGCGCA
GTTCTGCGCAGAACCGCAGGCCTGCCGCACGCTCGCGGATGTTGCGGCGCATGTGGACGCCTTTGTGCTGGATGCCTTCG
GGGTTTTGAATGTGGGCGCGACGCCCATTCCCGGCGCGGTGGAGCGCATTGCGCAGTTGCGCGCCATGGGCAAACGGCTG
ATCGTGCTGACCAATGCCGCAAGCGATGATCATGCCTTTGCCGTGGCCAAGTTCCGGGGCCTGGGGTTTGATTTTTCCGC
CGATGAGATCGTGACCAGCCGCGATGTCTGCGTTCAGAATATCCGCACCGACTTGCCAAAGGGCCGCTGGGGTGCCGTGT
GCAAGGCGAGCGACACGCTGGACGACATAGATCTGGATATCGTCGCCTGGACCGCAGAGGCACAGCCCGAAGTGGATGGA
TTCTTGATGCTCTCCAGCGAGCGCATTGATGACGCGCTCATGCAGGCGCTGGAACAGGCCTTACGCGCCCGGATGCGCCC
GCTTGTCTGCGCCAACCCCGATCTTGTGGCCCCGCGCGAAACCGGACTGAGTTGCGAGCCCGGGTTTTTCACCCATGCGC
TGGCAGATCGCACCGGCGTCGTGCCGCAATTTTTCGGCAAGCCATTCGGCAATGCGTTTCAGGCGGTTATGGATCGCCTT
GGCGCAGTCTCCCCCGGGCGCATCGCCATGGTCGGGGACACATTGCACACTGACGTTTTGGGCGGCGCTGCGGCGGGCAT
GAAAACCGTACTGATCGAGGATCACGGGCTGTTCAAGGGCCACGACGTTGCCGCGTATATGCGCCGCTGCGGCATCCGGC
CAGACTTCATCTGTCCGACGACCTGA

Upstream 100 bases:

>100_bases
GCGTCAAACGCTACCGGGAATTGCGCGGGCATTATGAAAAACTGTGGCCGCTTCTGTCTGACTGGAACGCCGGGCTGCGC
AAGTTCACCAAGGAACAACA

Downstream 100 bases:

>100_bases
GTCTACCGAAAACAACGGGTTTAGCGCACGTCCAATGACGCCGTCAGGGCGCGCAGATCGCGGGGCGCATATATTTTGCG
CGCAGCTTTCTTTACACATG

Product: hydrolase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSYAAVLSTEAAFDRYEQIRDRLPGAQFCAEPQACRTLADVAAHVDAFVLDAFGVLNVGATPIPGAVERIAQLRAMGKRL
IVLTNAASDDHAFAVAKFRGLGFDFSADEIVTSRDVCVQNIRTDLPKGRWGAVCKASDTLDDIDLDIVAWTAEAQPEVDG
FLMLSSERIDDALMQALEQALRARMRPLVCANPDLVAPRETGLSCEPGFFTHALADRTGVVPQFFGKPFGNAFQAVMDRL
GAVSPGRIAMVGDTLHTDVLGGAAAGMKTVLIEDHGLFKGHDVAAYMRRCGIRPDFICPTT

Sequences:

>Translated_301_residues
MSYAAVLSTEAAFDRYEQIRDRLPGAQFCAEPQACRTLADVAAHVDAFVLDAFGVLNVGATPIPGAVERIAQLRAMGKRL
IVLTNAASDDHAFAVAKFRGLGFDFSADEIVTSRDVCVQNIRTDLPKGRWGAVCKASDTLDDIDLDIVAWTAEAQPEVDG
FLMLSSERIDDALMQALEQALRARMRPLVCANPDLVAPRETGLSCEPGFFTHALADRTGVVPQFFGKPFGNAFQAVMDRL
GAVSPGRIAMVGDTLHTDVLGGAAAGMKTVLIEDHGLFKGHDVAAYMRRCGIRPDFICPTT
>Mature_300_residues
SYAAVLSTEAAFDRYEQIRDRLPGAQFCAEPQACRTLADVAAHVDAFVLDAFGVLNVGATPIPGAVERIAQLRAMGKRLI
VLTNAASDDHAFAVAKFRGLGFDFSADEIVTSRDVCVQNIRTDLPKGRWGAVCKASDTLDDIDLDIVAWTAEAQPEVDGF
LMLSSERIDDALMQALEQALRARMRPLVCANPDLVAPRETGLSCEPGFFTHALADRTGVVPQFFGKPFGNAFQAVMDRLG
AVSPGRIAMVGDTLHTDVLGGAAAGMKTVLIEDHGLFKGHDVAAYMRRCGIRPDFICPTT

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. NagD family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17560956, Length=327, Percent_Identity=25.3822629969419, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562458, Length=297, Percent_Identity=26.5993265993266, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17558880, Length=295, Percent_Identity=26.1016949152542, Blast_Score=71, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 32386; Mature: 32255

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAAVLSTEAAFDRYEQIRDRLPGAQFCAEPQACRTLADVAAHVDAFVLDAFGVLNVGA
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPIPGAVERIAQLRAMGKRLIVLTNAASDDHAFAVAKFRGLGFDFSADEIVTSRDVCVQN
CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
IRTDLPKGRWGAVCKASDTLDDIDLDIVAWTAEAQPEVDGFLMLSSERIDDALMQALEQA
HHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHH
LRARMRPLVCANPDLVAPRETGLSCEPGFFTHALADRTGVVPQFFGKPFGNAFQAVMDRL
HHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHH
GAVSPGRIAMVGDTLHTDVLGGAAAGMKTVLIEDHGLFKGHDVAAYMRRCGIRPDFICPT
CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCC
T
C
>Mature Secondary Structure 
SYAAVLSTEAAFDRYEQIRDRLPGAQFCAEPQACRTLADVAAHVDAFVLDAFGVLNVGA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TPIPGAVERIAQLRAMGKRLIVLTNAASDDHAFAVAKFRGLGFDFSADEIVTSRDVCVQN
CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH
IRTDLPKGRWGAVCKASDTLDDIDLDIVAWTAEAQPEVDGFLMLSSERIDDALMQALEQA
HHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHH
LRARMRPLVCANPDLVAPRETGLSCEPGFFTHALADRTGVVPQFFGKPFGNAFQAVMDRL
HHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHH
GAVSPGRIAMVGDTLHTDVLGGAAAGMKTVLIEDHGLFKGHDVAAYMRRCGIRPDFICPT
CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA