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The map label for this gene is ydfG [C]

Identifier: 110680773

GI number: 110680773

Start: 3479333

End: 3480058

Strand: Direct

Name: ydfG [C]

Synonym: RD1_3616

Alternate gene names: 110680773

Gene position: 3479333-3480058 (Clockwise)

Preceding gene: 110680772

Following gene: 110680774

Centisome position: 84.18

GC content: 57.16

Gene sequence:

>726_bases
ATGAGCACAAAACCATTGGTCGCAATTACGGGCGCCAGTTCCGGTATCGGGGCCGCCGTGGCAAAAACCTTTTCGGATGC
CGGGCATCCTGTCTTGTTGATGGCGCGCCGGCTCGACCGGATGGAGGCGCTGAACCTGCCCAATGCGGTGTGTTGCGAAG
TTGACGTGCGCGACCGTGCCCAGATCCGTGCAGCCGTCGAAAAAGGCGAAGCCGCATACGGCCCCGTCGATATGATGTTC
TGCAACGCTGGTATTGCGCGGCTTGCCGATATCGGCACGCAGCCCCCGGAAGAATGGGACGAGATGATCGACATCAACAC
CAAGGGCGTGATGAACGCGGTGCATGCGGTGATGTCGGACATGATGGAGCGCCGCGCAGGCACGCTTTTCATGATGAGTT
CGATTGCCGGGCGCAAAATCTATCCGGATCATACGGTCTATTGCGGCACCAAGTTCTTTGTCCACGCGGTGTCTGAATCC
TTGCGCGAATATCTGTCCGATTACGATGTGCGGGTCATTGTTGTGTCCCCCGGCATCATCGAAACCGAAGTCCTCGGCGC
GGTGAATGATCCCAATACGCTCAAGGCCTATCAGGACAACAAGAAAAAGATCGGCGGCGGGATCGGCCCGGAACATGTGG
CATCCATCATGTTGCACAGCTATCAGATGCCACAAAACGCGCTGATCCAGGAAATTTGCATCACGCCGACGCGGCAGAAA
TTCTGA

Upstream 100 bases:

>100_bases
GATGCGAGACAGGTTCTCCTTTGTCGATATCGCCGCCAATGCCGGTCAGCTTGAGCAATTCATCGCAATCCAGACGTAGG
CCATTTCAGGGGAGGGTAAG

Downstream 100 bases:

>100_bases
AGCCAAGGGATGGATAATGTCGCAGAGGCATGCGCGCAGGCGGTGCGTCAGCGACTGTTGGAAACGGTGCGGCGAGGATT
ATGACAGAGCATCCTGAAAT

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSTKPLVAITGASSGIGAAVAKTFSDAGHPVLLMARRLDRMEALNLPNAVCCEVDVRDRAQIRAAVEKGEAAYGPVDMMF
CNAGIARLADIGTQPPEEWDEMIDINTKGVMNAVHAVMSDMMERRAGTLFMMSSIAGRKIYPDHTVYCGTKFFVHAVSES
LREYLSDYDVRVIVVSPGIIETEVLGAVNDPNTLKAYQDNKKKIGGGIGPEHVASIMLHSYQMPQNALIQEICITPTRQK
F

Sequences:

>Translated_241_residues
MSTKPLVAITGASSGIGAAVAKTFSDAGHPVLLMARRLDRMEALNLPNAVCCEVDVRDRAQIRAAVEKGEAAYGPVDMMF
CNAGIARLADIGTQPPEEWDEMIDINTKGVMNAVHAVMSDMMERRAGTLFMMSSIAGRKIYPDHTVYCGTKFFVHAVSES
LREYLSDYDVRVIVVSPGIIETEVLGAVNDPNTLKAYQDNKKKIGGGIGPEHVASIMLHSYQMPQNALIQEICITPTRQK
F
>Mature_240_residues
STKPLVAITGASSGIGAAVAKTFSDAGHPVLLMARRLDRMEALNLPNAVCCEVDVRDRAQIRAAVEKGEAAYGPVDMMFC
NAGIARLADIGTQPPEEWDEMIDINTKGVMNAVHAVMSDMMERRAGTLFMMSSIAGRKIYPDHTVYCGTKFFVHAVSESL
REYLSDYDVRVIVVSPGIIETEVLGAVNDPNTLKAYQDNKKKIGGGIGPEHVASIMLHSYQMPQNALIQEICITPTRQKF

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=27.0916334661355, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=30.4123711340206, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=29.8429319371728, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI223718074, Length=252, Percent_Identity=26.5873015873016, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI33667109, Length=186, Percent_Identity=30.6451612903226, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI5031737, Length=186, Percent_Identity=30.6451612903226, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=26.8041237113402, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32483357, Length=184, Percent_Identity=26.6304347826087, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI7705925, Length=216, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40254992, Length=182, Percent_Identity=28.021978021978, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=248, Percent_Identity=29.8387096774194, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=34.2391304347826, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=32.4324324324324, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=27.4111675126904, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786701, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786812, Length=219, Percent_Identity=26.027397260274, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=237, Percent_Identity=28.2700421940928, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=235, Percent_Identity=26.8085106382979, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=208, Percent_Identity=24.5192307692308, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=218, Percent_Identity=26.605504587156, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=232, Percent_Identity=27.1551724137931, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=251, Percent_Identity=31.0756972111554, Blast_Score=123, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=27.6, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21358495, Length=225, Percent_Identity=28.4444444444444, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24641232, Length=247, Percent_Identity=27.1255060728745, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=29.6, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007234, Length=256, Percent_Identity=29.296875, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24663911, Length=257, Percent_Identity=28.4046692607004, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=29.2817679558011, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24648944, Length=243, Percent_Identity=23.0452674897119, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=26.3440860215054, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643142, Length=188, Percent_Identity=28.1914893617021, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI23397609, Length=186, Percent_Identity=28.494623655914, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007232, Length=183, Percent_Identity=32.7868852459016, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24639444, Length=236, Percent_Identity=24.5762711864407, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364892, Length=224, Percent_Identity=24.1071428571429, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644339, Length=209, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=24.7311827956989, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26277; Mature: 26146

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKPLVAITGASSGIGAAVAKTFSDAGHPVLLMARRLDRMEALNLPNAVCCEVDVRDRA
CCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
QIRAAVEKGEAAYGPVDMMFCNAGIARLADIGTQPPEEWDEMIDINTKGVMNAVHAVMSD
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
MMERRAGTLFMMSSIAGRKIYPDHTVYCGTKFFVHAVSESLREYLSDYDVRVIVVSPGII
HHHHHCCCEEEEHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
ETEVLGAVNDPNTLKAYQDNKKKIGGGIGPEHVASIMLHSYQMPQNALIQEICITPTRQK
HHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
F
C
>Mature Secondary Structure 
STKPLVAITGASSGIGAAVAKTFSDAGHPVLLMARRLDRMEALNLPNAVCCEVDVRDRA
CCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHH
QIRAAVEKGEAAYGPVDMMFCNAGIARLADIGTQPPEEWDEMIDINTKGVMNAVHAVMSD
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
MMERRAGTLFMMSSIAGRKIYPDHTVYCGTKFFVHAVSESLREYLSDYDVRVIVVSPGII
HHHHHCCCEEEEHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
ETEVLGAVNDPNTLKAYQDNKKKIGGGIGPEHVASIMLHSYQMPQNALIQEICITPTRQK
HHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]