Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 110680638

GI number: 110680638

Start: 3343925

End: 3345100

Strand: Direct

Name: ypdF [C]

Synonym: RD1_3474

Alternate gene names: 110680638

Gene position: 3343925-3345100 (Clockwise)

Preceding gene: 110680634

Following gene: 110680639

Centisome position: 80.91

GC content: 61.14

Gene sequence:

>1176_bases
ATGCCGGATCTGCCCTTCGCCCGCGCGGAATATGACATCCGCCTTGCCAAAACCCGCAGTGAGATGGCCCGCCGGGGCCT
TGAGGCGCTCTTTGTCACGGACCCCTCCAATATGGCTTGGCTGACGGGCTACGACGGATGGTCGTTCTACGTGCATCAGG
GGGTTCTCCTGACCCTCGAAGGCGAGCCGATCTGGTGGGGACGCGCGATGGACGCGGTTGGCGCTGGTCTCACTACCTAT
TTGGCTGCGGACAATATCCGAGGCTATGATGACACCTATGTCCAGAACCCGGACAAACACCCCATGCAGGACCTCGCGCG
CCTGATCCGCGAAGAGGGCGCCGAGGGCTTTCGCATCGGGCTGGAGCTGGACAATTACTATTTTACAGCCGCCGCTTATC
TGACACTGCAACAGGCCCTGAGCGGCGCAACATTTCAGGACGCCACGGGTTTGGTGAACTGGCAACGCGCCGTTAAATCA
GACACCGAAATCGCATACATGCGCCGCGCCGCTGCCATCGTCGAGCATATGCATGACGTGATCCGGGAGCGGGCGGAACC
GGGCATACGCAAGAATGACCTGATTGCGGATATCTATCACGCGTCGATCTCCGGGGCCGAGGGGCATTGGGGCGATTATC
CCGCGATTGTGCCGATGGCCCCGTCCGGCATGGATGCCACCGCCCCGCATCTGACGTGGGACGACCGCCCCCTGCGCACC
GGGGAGGCCACGTTTTTCGAAATCGCCGGGGCGCACAAACGGTATCAATGCCCGCAATCCCGCACGTTATTTCTGGGCAA
TCCGCCGCAAAAATATCTGGACGCGGAACAGGCCGTGCTCGAAGCGATCTGCGCGGGGCTGGAGCAGGCAAAACCCGGTA
ACCGGTGCGAGGACATCGCACGGGCCTTCAACACAACGCTCAACAAATACGGGTTTCAAAAAGACAGCCGCTGCGGCTAT
GCGATCGGCTTGTCCTATCCCCCCGACTGGGGCGAGCGCACCATGTCCTTTCGCACAGGCGACAAGAGCGTGCTGGAACC
GGGTATGAGTTTTCATTTCATGCCCGCGCTCTGGCTGGATGATGGCGGTCTTGAGATCACCGAGCCGATTGTCATCACGC
AAACCGGCGCCACCTGCCTGTGCAGCACGCCACGCGCCTTGGTCATCAAAGGGTAG

Upstream 100 bases:

>100_bases
CGCGCGTCAATGCCCCCAAAAATTAAATCCGGTGGTGCAAAATCGCTGGCGGGAGCGGCAAGTCATGCTAACCTGCCGCA
TCTGAACGATTGGAACGCTG

Downstream 100 bases:

>100_bases
ACGGATGGGCGACACAGCGGTCCATTCATCGGTCGATTTCAATGCAGAGGGGGTGCAGCACGGGCACCTGCGCCTGCCCC
ATAGCCGGGATGACAGCGCG

Product: peptidase, M24 family protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MPDLPFARAEYDIRLAKTRSEMARRGLEALFVTDPSNMAWLTGYDGWSFYVHQGVLLTLEGEPIWWGRAMDAVGAGLTTY
LAADNIRGYDDTYVQNPDKHPMQDLARLIREEGAEGFRIGLELDNYYFTAAAYLTLQQALSGATFQDATGLVNWQRAVKS
DTEIAYMRRAAAIVEHMHDVIRERAEPGIRKNDLIADIYHASISGAEGHWGDYPAIVPMAPSGMDATAPHLTWDDRPLRT
GEATFFEIAGAHKRYQCPQSRTLFLGNPPQKYLDAEQAVLEAICAGLEQAKPGNRCEDIARAFNTTLNKYGFQKDSRCGY
AIGLSYPPDWGERTMSFRTGDKSVLEPGMSFHFMPALWLDDGGLEITEPIVITQTGATCLCSTPRALVIKG

Sequences:

>Translated_391_residues
MPDLPFARAEYDIRLAKTRSEMARRGLEALFVTDPSNMAWLTGYDGWSFYVHQGVLLTLEGEPIWWGRAMDAVGAGLTTY
LAADNIRGYDDTYVQNPDKHPMQDLARLIREEGAEGFRIGLELDNYYFTAAAYLTLQQALSGATFQDATGLVNWQRAVKS
DTEIAYMRRAAAIVEHMHDVIRERAEPGIRKNDLIADIYHASISGAEGHWGDYPAIVPMAPSGMDATAPHLTWDDRPLRT
GEATFFEIAGAHKRYQCPQSRTLFLGNPPQKYLDAEQAVLEAICAGLEQAKPGNRCEDIARAFNTTLNKYGFQKDSRCGY
AIGLSYPPDWGERTMSFRTGDKSVLEPGMSFHFMPALWLDDGGLEITEPIVITQTGATCLCSTPRALVIKG
>Mature_390_residues
PDLPFARAEYDIRLAKTRSEMARRGLEALFVTDPSNMAWLTGYDGWSFYVHQGVLLTLEGEPIWWGRAMDAVGAGLTTYL
AADNIRGYDDTYVQNPDKHPMQDLARLIREEGAEGFRIGLELDNYYFTAAAYLTLQQALSGATFQDATGLVNWQRAVKSD
TEIAYMRRAAAIVEHMHDVIRERAEPGIRKNDLIADIYHASISGAEGHWGDYPAIVPMAPSGMDATAPHLTWDDRPLRTG
EATFFEIAGAHKRYQCPQSRTLFLGNPPQKYLDAEQAVLEAICAGLEQAKPGNRCEDIARAFNTTLNKYGFQKDSRCGYA
IGLSYPPDWGERTMSFRTGDKSVLEPGMSFHFMPALWLDDGGLEITEPIVITQTGATCLCSTPRALVIKG

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=245, Percent_Identity=24.8979591836735, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789275, Length=273, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43461; Mature: 43329

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLPFARAEYDIRLAKTRSEMARRGLEALFVTDPSNMAWLTGYDGWSFYVHQGVLLTLE
CCCCCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCEEEEECCCCEEEEEECCEEEEEC
GEPIWWGRAMDAVGAGLTTYLAADNIRGYDDTYVQNPDKHPMQDLARLIREEGAEGFRIG
CCCEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
LELDNYYFTAAAYLTLQQALSGATFQDATGLVNWQRAVKSDTEIAYMRRAAAIVEHMHDV
EEECCEEEHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IRERAEPGIRKNDLIADIYHASISGAEGHWGDYPAIVPMAPSGMDATAPHLTWDDRPLRT
HHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
GEATFFEIAGAHKRYQCPQSRTLFLGNPPQKYLDAEQAVLEAICAGLEQAKPGNRCEDIA
CCCEEEEECCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RAFNTTLNKYGFQKDSRCGYAIGLSYPPDWGERTMSFRTGDKSVLEPGMSFHFMPALWLD
HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCHHHHCCCCCEEEEEEEEEC
DGGLEITEPIVITQTGATCLCSTPRALVIKG
CCCCEEECCEEEEECCCEEEECCCCEEEEEC
>Mature Secondary Structure 
PDLPFARAEYDIRLAKTRSEMARRGLEALFVTDPSNMAWLTGYDGWSFYVHQGVLLTLE
CCCCCCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCEEEEECCCCEEEEEECCEEEEEC
GEPIWWGRAMDAVGAGLTTYLAADNIRGYDDTYVQNPDKHPMQDLARLIREEGAEGFRIG
CCCEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
LELDNYYFTAAAYLTLQQALSGATFQDATGLVNWQRAVKSDTEIAYMRRAAAIVEHMHDV
EEECCEEEHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IRERAEPGIRKNDLIADIYHASISGAEGHWGDYPAIVPMAPSGMDATAPHLTWDDRPLRT
HHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
GEATFFEIAGAHKRYQCPQSRTLFLGNPPQKYLDAEQAVLEAICAGLEQAKPGNRCEDIA
CCCEEEEECCCHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RAFNTTLNKYGFQKDSRCGYAIGLSYPPDWGERTMSFRTGDKSVLEPGMSFHFMPALWLD
HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCHHHHCCCCCEEEEEEEEEC
DGGLEITEPIVITQTGATCLCSTPRALVIKG
CCCCEEECCEEEEECCCEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]