| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yajO [H]
Identifier: 110680602
GI number: 110680602
Start: 3296252
End: 3297193
Strand: Direct
Name: yajO [H]
Synonym: RD1_3432
Alternate gene names: 110680602
Gene position: 3296252-3297193 (Clockwise)
Preceding gene: 110680600
Following gene: 110680603
Centisome position: 79.75
GC content: 60.19
Gene sequence:
>942_bases ATGAAAAATCACCTGACCAGCCCGAACGGCACCCCCGCCAGTCGCCTCGCCTTTGGCACCATGCAATTTGGCGGCGCTGC AGATGCCACAGCGTCGCGGGACATGTTTGATGCCTGCCGCGCGAAGGGCATCACTCATTTCGACACCGCACATCTTTATA CGGGGGGTGCATCGGAAAAACTGCTGGGCGAGATGATCGCCGATCAGCGCGATGATCTGATCATCGCGACCAAAGTCGCC TATGCGGGCGGGGCCGGGCGCGACAATATTCTGAGCAGCTTCGAAGTCTCACGCCAGCGCTTGAACCTCGATATGGTTGA TGTGCTTTATCTGCACCGGTTTGACCCGGACACCGACCTGAACGAAAGTTTCGAGACGCTGGCACAGATAAAGGCCAAAG GACACATCCGCTATGTCGGCGTGTCAAATTTTGCAGCATGGCAAGTGATGAAAGCCATCGCCGTGGCCGCGCGGTTCGAT CTGCGGGTAGATATTCTGCAACCCATGTACAGCCTCGTGAAGCGTCAGGCGGAGGTTGAAATCCTGCCCATGTGCGCCGA TCAGGGTGTGGCCTGCGCACCCTATTCCCCGCTTGGCGGCGGGTTGCTGACCGGCAAATACGCCAGCGGCGGTTCAGGTC GGCTTAGCGAGGATGAACGCTATGCCACGCGATATGGTCAGGATTGGATGCACAGCGCTGCAGAAGACCTCGGCAGGATT GCCGCCGCCGAAGGGATGCATCCGGCAACACTCGCAGTCGCCTGGGCTGCCGCACATCCGATGGGGCCGACGCCAATCAT ATCAGCACGCTCGACCACGCAGCTTGCGCCCTCGCTTGCAGCGATTGACACCAAGCTGACGCCCGATCTTTACAACCGGA TGCGCGCGCTTACCCCGACACCGCCCCCCGCGACCGACAGGATCGAGGAACAGCAGGCATGA
Upstream 100 bases:
>100_bases GTCGTTTTTATCGACAACAATCATTTTTCGCCCCTGTTTGCGTTTATCTCTTCACGTTTGAACGTTGCATGCGCGCAGTC TGCGTGCCACTTCTTTTGAC
Downstream 100 bases:
>100_bases AGGGGTTTGCGCGCTCGATTGACACAAGCGATACGCCTGCCATCCGCCGAACACCATGATGAAAAAACTGCCCGCCACTG CCAGTGTCGCGACGCCCGCG
Product: oxidoreductase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MKNHLTSPNGTPASRLAFGTMQFGGAADATASRDMFDACRAKGITHFDTAHLYTGGASEKLLGEMIADQRDDLIIATKVA YAGGAGRDNILSSFEVSRQRLNLDMVDVLYLHRFDPDTDLNESFETLAQIKAKGHIRYVGVSNFAAWQVMKAIAVAARFD LRVDILQPMYSLVKRQAEVEILPMCADQGVACAPYSPLGGGLLTGKYASGGSGRLSEDERYATRYGQDWMHSAAEDLGRI AAAEGMHPATLAVAWAAAHPMGPTPIISARSTTQLAPSLAAIDTKLTPDLYNRMRALTPTPPPATDRIEEQQA
Sequences:
>Translated_313_residues MKNHLTSPNGTPASRLAFGTMQFGGAADATASRDMFDACRAKGITHFDTAHLYTGGASEKLLGEMIADQRDDLIIATKVA YAGGAGRDNILSSFEVSRQRLNLDMVDVLYLHRFDPDTDLNESFETLAQIKAKGHIRYVGVSNFAAWQVMKAIAVAARFD LRVDILQPMYSLVKRQAEVEILPMCADQGVACAPYSPLGGGLLTGKYASGGSGRLSEDERYATRYGQDWMHSAAEDLGRI AAAEGMHPATLAVAWAAAHPMGPTPIISARSTTQLAPSLAAIDTKLTPDLYNRMRALTPTPPPATDRIEEQQA >Mature_313_residues MKNHLTSPNGTPASRLAFGTMQFGGAADATASRDMFDACRAKGITHFDTAHLYTGGASEKLLGEMIADQRDDLIIATKVA YAGGAGRDNILSSFEVSRQRLNLDMVDVLYLHRFDPDTDLNESFETLAQIKAKGHIRYVGVSNFAAWQVMKAIAVAARFD LRVDILQPMYSLVKRQAEVEILPMCADQGVACAPYSPLGGGLLTGKYASGGSGRLSEDERYATRYGQDWMHSAAEDLGRI AAAEGMHPATLAVAWAAAHPMGPTPIISARSTTQLAPSLAAIDTKLTPDLYNRMRALTPTPPPATDRIEEQQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI27436964, Length=325, Percent_Identity=30.1538461538462, Blast_Score=122, Evalue=5e-28, Organism=Homo sapiens, GI27436966, Length=317, Percent_Identity=30.2839116719243, Blast_Score=121, Evalue=1e-27, Organism=Homo sapiens, GI27436962, Length=317, Percent_Identity=30.2839116719243, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI4504825, Length=320, Percent_Identity=27.5, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI27436969, Length=320, Percent_Identity=27.5, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI27436971, Length=328, Percent_Identity=25.9146341463415, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI223718702, Length=202, Percent_Identity=34.6534653465347, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI41152114, Length=301, Percent_Identity=29.2358803986711, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI41327764, Length=204, Percent_Identity=33.8235294117647, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI223718708, Length=162, Percent_Identity=30.8641975308642, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI87081735, Length=308, Percent_Identity=32.7922077922078, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1789199, Length=337, Percent_Identity=27.893175074184, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789375, Length=282, Percent_Identity=29.0780141843972, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788070, Length=309, Percent_Identity=25.5663430420712, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788081, Length=296, Percent_Identity=27.3648648648649, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787674, Length=208, Percent_Identity=25.9615384615385, Blast_Score=65, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6323998, Length=299, Percent_Identity=27.7591973244147, Blast_Score=103, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6319958, Length=295, Percent_Identity=27.1186440677966, Blast_Score=102, Evalue=8e-23, Organism=Saccharomyces cerevisiae, GI6325169, Length=319, Percent_Identity=23.5109717868339, Blast_Score=102, Evalue=9e-23, Organism=Saccharomyces cerevisiae, GI6322615, Length=248, Percent_Identity=27.4193548387097, Blast_Score=90, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6319951, Length=323, Percent_Identity=24.7678018575851, Blast_Score=89, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 33730; Mature: 33730
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00062 ALDOKETO_REDUCTASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNHLTSPNGTPASRLAFGTMQFGGAADATASRDMFDACRAKGITHFDTAHLYTGGASEK CCCCCCCCCCCCHHHHEEEHHCCCCCCCCCCHHHHHHHHHHCCCCEECCHHEEECCCHHH LLGEMIADQRDDLIIATKVAYAGGAGRDNILSSFEVSRQRLNLDMVDVLYLHRFDPDTDL HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCH NESFETLAQIKAKGHIRYVGVSNFAAWQVMKAIAVAARFDLRVDILQPMYSLVKRQAEVE HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCE ILPMCADQGVACAPYSPLGGGLLTGKYASGGSGRLSEDERYATRYGQDWMHSAAEDLGRI EEEEECCCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH AAAEGMHPATLAVAWAAAHPMGPTPIISARSTTQLAPSLAAIDTKLTPDLYNRMRALTPT HHHCCCCHHHHHHHHHHCCCCCCCCEECCCCHHHHCCHHHHHCCCCCHHHHHHHHHCCCC PPPATDRIEEQQA CCCCCCCHHHCCC >Mature Secondary Structure MKNHLTSPNGTPASRLAFGTMQFGGAADATASRDMFDACRAKGITHFDTAHLYTGGASEK CCCCCCCCCCCCHHHHEEEHHCCCCCCCCCCHHHHHHHHHHCCCCEECCHHEEECCCHHH LLGEMIADQRDDLIIATKVAYAGGAGRDNILSSFEVSRQRLNLDMVDVLYLHRFDPDTDL HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCH NESFETLAQIKAKGHIRYVGVSNFAAWQVMKAIAVAARFDLRVDILQPMYSLVKRQAEVE HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCE ILPMCADQGVACAPYSPLGGGLLTGKYASGGSGRLSEDERYATRYGQDWMHSAAEDLGRI EEEEECCCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH AAAEGMHPATLAVAWAAAHPMGPTPIISARSTTQLAPSLAAIDTKLTPDLYNRMRALTPT HHHCCCCHHHHHHHHHHCCCCCCCCEECCCCHHHHCCHHHHHCCCCCHHHHHHHHHCCCC PPPATDRIEEQQA CCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]