Click here to switch to the map view.

The map label for this gene is 110680577

Identifier: 110680577

GI number: 110680577

Start: 3272121

End: 3273167

Strand: Direct

Name: 110680577

Synonym: RD1_3406

Alternate gene names: NA

Gene position: 3272121-3273167 (Clockwise)

Preceding gene: 110680576

Following gene: 110680582

Centisome position: 79.17

GC content: 62.08

Gene sequence:

>1047_bases
ATGGCCGATGCCAGCGAACAAGACCCACAGACCGGCGCGGCGCATACGCGACCGACACCCTTGGGCATATATGATCGTCC
CAAAACGCAGGTTATCTCCGGCATAGAGATCATCGCGATTGCGATCTCGGCCATCTGGCTCTTGGGTGCGGGGCTGTTTT
TCCTGATGCTGCCCAGCGAGGCAACGGAGGGCGGCGAGGGCGCGGGCGCTTTGCGGTTCCTGATGACGATCATGGCCATA
TTCATGCCGATCGGGATGGTGTGGGTTGCGGCCTCTGCGGCGCGCGCTTCCAAAGTGATGCGCGAGGAAAGCCAGCGTCT
GCAAGCCTCGCTGGATGCGATCAGGCATACCTATATCGCACAAAGCCAGAATGCCGCCACCGGGGTGGAGCCTGCCTCCG
TTGCAAGGAAACTCGATGAAATCGCAGCCGCCACGCGCAAAACCGAAACGGTGCTGGCCACCTTTTCATCGCGGCGCGAA
CAAGAGCGGCAAACTCCGGCGCGCGCACCGGCCCCCGCGGCGGTTGATCAGCAACAGGCGCTTGCCCTTGGCACCCATGC
CGAGGACCTTGCCCCGCCGCTGGACACGGCCGATTTCATCCGTGCGCTGAACTTCCCGGAAACCGCCGAGGATACGCAGG
GCTTTGCGGCCTTGCGGCGCGCTTTGAAAGACCGCCCCTCTGCGCAGCTCATTCAGGCGGCACAGGATATCCTGACACTG
CTCAGTCAGGACGGGATTTACATGGACGACCTGTTGCCCGACCGCGCACGCCCTGAAATCTGGCGTCATTTCGGACAGGG
CGTCAGGGGTCGCCCCATCGCGCCGCTCGGAGGGATCAGGGATCGCTCCTCGCTCGCGCTCACATCCGGGCGCATGAAAC
AGGACCCGATTTTCCGCGATGCCGCGCATCATTTTTTGCGGCTGTTTGACAAGACATTCGCCGAATTCGAGAAACGCGCC
GATGACAGTGATATTGTAGCCCTTGCAGAAACACGTACCGCGCGGGCATTCATGTTGCTGGGGCGCGTTGCCGGGACTTT
CGACTGA

Upstream 100 bases:

>100_bases
TTGGCAAGGACGAAGGTGACAGCGTCGAGGTGCGCACGCCGGGCGGGCAAAAGGCCTATGAGGTGTTGAAAATCGTCTAT
GCCTGACAGGACCCCGTGAT

Downstream 100 bases:

>100_bases
GCAGGCTAGAGCGGCTAACGAAACACCTGACACATCGAATAACACGTAACGCGCTGAATTCTTTGATTTCAGGCAGCATT
ACGTGATCGCGGTTTTTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MADASEQDPQTGAAHTRPTPLGIYDRPKTQVISGIEIIAIAISAIWLLGAGLFFLMLPSEATEGGEGAGALRFLMTIMAI
FMPIGMVWVAASAARASKVMREESQRLQASLDAIRHTYIAQSQNAATGVEPASVARKLDEIAAATRKTETVLATFSSRRE
QERQTPARAPAPAAVDQQQALALGTHAEDLAPPLDTADFIRALNFPETAEDTQGFAALRRALKDRPSAQLIQAAQDILTL
LSQDGIYMDDLLPDRARPEIWRHFGQGVRGRPIAPLGGIRDRSSLALTSGRMKQDPIFRDAAHHFLRLFDKTFAEFEKRA
DDSDIVALAETRTARAFMLLGRVAGTFD

Sequences:

>Translated_348_residues
MADASEQDPQTGAAHTRPTPLGIYDRPKTQVISGIEIIAIAISAIWLLGAGLFFLMLPSEATEGGEGAGALRFLMTIMAI
FMPIGMVWVAASAARASKVMREESQRLQASLDAIRHTYIAQSQNAATGVEPASVARKLDEIAAATRKTETVLATFSSRRE
QERQTPARAPAPAAVDQQQALALGTHAEDLAPPLDTADFIRALNFPETAEDTQGFAALRRALKDRPSAQLIQAAQDILTL
LSQDGIYMDDLLPDRARPEIWRHFGQGVRGRPIAPLGGIRDRSSLALTSGRMKQDPIFRDAAHHFLRLFDKTFAEFEKRA
DDSDIVALAETRTARAFMLLGRVAGTFD
>Mature_347_residues
ADASEQDPQTGAAHTRPTPLGIYDRPKTQVISGIEIIAIAISAIWLLGAGLFFLMLPSEATEGGEGAGALRFLMTIMAIF
MPIGMVWVAASAARASKVMREESQRLQASLDAIRHTYIAQSQNAATGVEPASVARKLDEIAAATRKTETVLATFSSRREQ
ERQTPARAPAPAAVDQQQALALGTHAEDLAPPLDTADFIRALNFPETAEDTQGFAALRRALKDRPSAQLIQAAQDILTLL
SQDGIYMDDLLPDRARPEIWRHFGQGVRGRPIAPLGGIRDRSSLALTSGRMKQDPIFRDAAHHFLRLFDKTFAEFEKRAD
DSDIVALAETRTARAFMLLGRVAGTFD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37845; Mature: 37713

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADASEQDPQTGAAHTRPTPLGIYDRPKTQVISGIEIIAIAISAIWLLGAGLFFLMLPSE
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ATEGGEGAGALRFLMTIMAIFMPIGMVWVAASAARASKVMREESQRLQASLDAIRHTYIA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSQNAATGVEPASVARKLDEIAAATRKTETVLATFSSRREQERQTPARAPAPAAVDQQQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LALGTHAEDLAPPLDTADFIRALNFPETAEDTQGFAALRRALKDRPSAQLIQAAQDILTL
HHHCCCHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LSQDGIYMDDLLPDRARPEIWRHFGQGVRGRPIAPLGGIRDRSSLALTSGRMKQDPIFRD
HHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
AAHHFLRLFDKTFAEFEKRADDSDIVALAETRTARAFMLLGRVAGTFD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADASEQDPQTGAAHTRPTPLGIYDRPKTQVISGIEIIAIAISAIWLLGAGLFFLMLPSE
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ATEGGEGAGALRFLMTIMAIFMPIGMVWVAASAARASKVMREESQRLQASLDAIRHTYIA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSQNAATGVEPASVARKLDEIAAATRKTETVLATFSSRREQERQTPARAPAPAAVDQQQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LALGTHAEDLAPPLDTADFIRALNFPETAEDTQGFAALRRALKDRPSAQLIQAAQDILTL
HHHCCCHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LSQDGIYMDDLLPDRARPEIWRHFGQGVRGRPIAPLGGIRDRSSLALTSGRMKQDPIFRD
HHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
AAHHFLRLFDKTFAEFEKRADDSDIVALAETRTARAFMLLGRVAGTFD
HHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA