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The map label for this gene is appC [H]

Identifier: 110680494

GI number: 110680494

Start: 3180184

End: 3181197

Strand: Direct

Name: appC [H]

Synonym: RD1_3316

Alternate gene names: 110680494

Gene position: 3180184-3181197 (Clockwise)

Preceding gene: 110680493

Following gene: 110680499

Centisome position: 76.94

GC content: 60.36

Gene sequence:

>1014_bases
ATGTGCTCTACGGCGTTCTTGACCCGAGGATCCGCTATGACTGATCAGAATACGGAAATCGAAAGCTTCGGCGCGCTCAA
GGACAAGGAACCGCAGAAAGAACCGCGCTCCCAGTGGAAAGACGTCTGGGATCAGTTCCGCAAGCACAAGGGCGCGTTGA
TCGGGGGTGGCTTTCTGGCCTTCATCACGCTTTTTGTACTGCTCGGCCCACTGATCTGGCAGGTGGATGCAAAGGCGCTG
GACATCCGCAACAAGGATTTGCGCCCCATTTACACAGCGCTCTGGGACGCCGATGCCAAGGTGCTGTGGTCACGCCCGCT
TGGCACGGACAACCTTGGTCGCGATATCATGGCGACGCTGATCGCGGGCGGTCAGGCCTCTCTTGCGGTGGGCTGGGCTG
CCATGGTGCTGTCCTTGCTGATCGGTACAGCCGTCGGGGTGATCGCTGGTTATTTCAAACGTCTCGACGGCGTTCTGATG
CGCATCACGGACCTGTTTTTATCACTGCCGATCCTGCCTCTGTTGCTGGTCGCGGTAACGCTGTTTCGCCAACCACTGCG
CGCGGCCTTCGGCCCCGAAGGCGGCATGTTCATCCTGATCGTCGGCGTCATCGGGATCACATCCTGGATGCCGACGGCGC
GGATCGTCCGGGGCGAAATCCTCGCCCTGAAGGAGCGGGAGTTCGTCCTCGCTGCCCGCTCGATCGGCACCACACCATTC
CTGATCATACGCCGCCACCTGCTGCCCAATGTGATCTCACCAATCATGGTCTCGGCGACCCTTGGCCTTGCCACGGCGAT
CATCACGGAAAGCGCATTGTCTTTCCTCGGCGTCGGGTTCCCCTCGGATTTTCCAACCTGGGGCAAGCTCCTATCCGATG
CCGTCCCCCGCATGGAAGAATTCCCCGAACGTGTGATGCTGCCCGGTATATTGATCTCCCTGACGGTCTTATCCGTCAAT
TACCTGGGCGATGGGCTGCGCGACGCCCTCGACCCCCGTATTCGCGGACGCTGA

Upstream 100 bases:

>100_bases
CAATTGCTGCTCACCGCACTTTTTGCCAATGATTTGCCGATGGTCATGACGCTCACCTTCATTTTCGCCATCCTGATCGT
ATTTTTCAACCTGATCGCAG

Downstream 100 bases:

>100_bases
CACAGCACCGATATGGGACGGCGGGCGGGGCGTCTTTCGCGCAGCGCAAAGAGCGCCGCTGCGCCGCCCCCCGAAACACG
GCTGATCTATTCGACCTTGG

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MCSTAFLTRGSAMTDQNTEIESFGALKDKEPQKEPRSQWKDVWDQFRKHKGALIGGGFLAFITLFVLLGPLIWQVDAKAL
DIRNKDLRPIYTALWDADAKVLWSRPLGTDNLGRDIMATLIAGGQASLAVGWAAMVLSLLIGTAVGVIAGYFKRLDGVLM
RITDLFLSLPILPLLLVAVTLFRQPLRAAFGPEGGMFILIVGVIGITSWMPTARIVRGEILALKEREFVLAARSIGTTPF
LIIRRHLLPNVISPIMVSATLGLATAIITESALSFLGVGFPSDFPTWGKLLSDAVPRMEEFPERVMLPGILISLTVLSVN
YLGDGLRDALDPRIRGR

Sequences:

>Translated_337_residues
MCSTAFLTRGSAMTDQNTEIESFGALKDKEPQKEPRSQWKDVWDQFRKHKGALIGGGFLAFITLFVLLGPLIWQVDAKAL
DIRNKDLRPIYTALWDADAKVLWSRPLGTDNLGRDIMATLIAGGQASLAVGWAAMVLSLLIGTAVGVIAGYFKRLDGVLM
RITDLFLSLPILPLLLVAVTLFRQPLRAAFGPEGGMFILIVGVIGITSWMPTARIVRGEILALKEREFVLAARSIGTTPF
LIIRRHLLPNVISPIMVSATLGLATAIITESALSFLGVGFPSDFPTWGKLLSDAVPRMEEFPERVMLPGILISLTVLSVN
YLGDGLRDALDPRIRGR
>Mature_337_residues
MCSTAFLTRGSAMTDQNTEIESFGALKDKEPQKEPRSQWKDVWDQFRKHKGALIGGGFLAFITLFVLLGPLIWQVDAKAL
DIRNKDLRPIYTALWDADAKVLWSRPLGTDNLGRDIMATLIAGGQASLAVGWAAMVLSLLIGTAVGVIAGYFKRLDGVLM
RITDLFLSLPILPLLLVAVTLFRQPLRAAFGPEGGMFILIVGVIGITSWMPTARIVRGEILALKEREFVLAARSIGTTPF
LIIRRHLLPNVISPIMVSATLGLATAIITESALSFLGVGFPSDFPTWGKLLSDAVPRMEEFPERVMLPGILISLTVLSVN
YLGDGLRDALDPRIRGR

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=317, Percent_Identity=35.0157728706625, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1787498, Length=332, Percent_Identity=34.3373493975904, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789964, Length=302, Percent_Identity=34.1059602649007, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1787760, Length=310, Percent_Identity=28.0645161290323, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789889, Length=265, Percent_Identity=32.0754716981132, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787549, Length=305, Percent_Identity=28.1967213114754, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788505, Length=232, Percent_Identity=27.1551724137931, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36822; Mature: 36822

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSTAFLTRGSAMTDQNTEIESFGALKDKEPQKEPRSQWKDVWDQFRKHKGALIGGGFLA
CCCCHHEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCHHHH
FITLFVLLGPLIWQVDAKALDIRNKDLRPIYTALWDADAKVLWSRPLGTDNLGRDIMATL
HHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH
IAGGQASLAVGWAAMVLSLLIGTAVGVIAGYFKRLDGVLMRITDLFLSLPILPLLLVAVT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRQPLRAAFGPEGGMFILIVGVIGITSWMPTARIVRGEILALKEREFVLAARSIGTTPF
HHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LIIRRHLLPNVISPIMVSATLGLATAIITESALSFLGVGFPSDFPTWGKLLSDAVPRMEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
FPERVMLPGILISLTVLSVNYLGDGLRDALDPRIRGR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure
MCSTAFLTRGSAMTDQNTEIESFGALKDKEPQKEPRSQWKDVWDQFRKHKGALIGGGFLA
CCCCHHEECCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCHHHH
FITLFVLLGPLIWQVDAKALDIRNKDLRPIYTALWDADAKVLWSRPLGTDNLGRDIMATL
HHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH
IAGGQASLAVGWAAMVLSLLIGTAVGVIAGYFKRLDGVLMRITDLFLSLPILPLLLVAVT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFRQPLRAAFGPEGGMFILIVGVIGITSWMPTARIVRGEILALKEREFVLAARSIGTTPF
HHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LIIRRHLLPNVISPIMVSATLGLATAIITESALSFLGVGFPSDFPTWGKLLSDAVPRMEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
FPERVMLPGILISLTVLSVNYLGDGLRDALDPRIRGR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]