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The map label for this gene is appB [H]

Identifier: 110680493

GI number: 110680493

Start: 3179220

End: 3180227

Strand: Direct

Name: appB [H]

Synonym: RD1_3315

Alternate gene names: 110680493

Gene position: 3179220-3180227 (Clockwise)

Preceding gene: 110680492

Following gene: 110680494

Centisome position: 76.92

GC content: 55.16

Gene sequence:

>1008_bases
ATGCTGACATACACCATCAGGCGACTGGTTCTTGCAATCCCGACGCTGCTTTTCATCAGCATCGTCATTTTCCTGCTGTT
GCAACTGGCACCGGGCGATCCGATGTCACAGGTTCCGCTGACGGTGCCACCCGAAGTCAAACAGCTGATGCGCGAGGCGC
TTGGCCTTGGTGAGCCGATCCATGTGCAATACTGGAAATGGCTGGTGCAGTTCTTCTGGGTCGAACCGCAGGTACTGATC
GACCATTGGTTCGGCACATCGTTTTCCGAAGGCAAGCTACGTGTCATCTCTTGGCAGACTCGCTCACCGGTGATGGACAT
CGTCATCCAGCGGCTGCCACAAACCCTCTGGGTGGTTGGCATGTCCTATATCGTGGGTATCCTGATTGCCCTGCCGATCG
GGATTTACTCGGCATACAAACAATACTCGCTCTTTGATCAGGCCGGGACATTCGTTTCCATGATCGGCTTTTCGATCCCC
CCGTTCTTCTCCGGCGTTCTGGTCATCGTGATCTTTTCGGTGAACCTCGGCTGGTTGCCCTCGATCTATGACACCACCCA
CGAGGTCACGGACTGGGCAAGCTTCAAAGTGCAGCTGCAACAGATGATCATGCCTGTCATGGTGCTCGCCCTGCAAACCA
CCGCGCAGATCAGCCGCTTCATGCGCGCCTCGATGCTCGACAACCTCAATCAGGATTATGTGCGCACAGCCCGCGCAAAG
GGCCTCAAGGAGAGCGTCGTGGTCATGGTGCATGTGCTGCGCAACTCGATGATCCCGATCATCACGGTGATCGCTCTGGG
CGTGCCGTCGATTTTTGGCGGCGCCATCATCACCGAAACCCTGTTTAAGGTGAACGGGATTGGTCAATTGCTGCTCACCG
CACTTTTTGCCAATGATTTGCCGATGGTCATGACGCTCACCTTCATTTTCGCCATCCTGATCGTATTTTTCAACCTGATC
GCAGATGTGCTCTACGGCGTTCTTGACCCGAGGATCCGCTATGACTGA

Upstream 100 bases:

>100_bases
CGCTTTCGGCCTGCCCTGCACCCTGAACACGACCGACCCGATTGCCAGAAGGCAAGACGGCCCGCACCAATAGCAAGAAC
GACGCAATGAAAGCGCAGGC

Downstream 100 bases:

>100_bases
TCAGAATACGGAAATCGAAAGCTTCGGCGCGCTCAAGGACAAGGAACCGCAGAAAGAACCGCGCTCCCAGTGGAAAGACG
TCTGGGATCAGTTCCGCAAG

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLTYTIRRLVLAIPTLLFISIVIFLLLQLAPGDPMSQVPLTVPPEVKQLMREALGLGEPIHVQYWKWLVQFFWVEPQVLI
DHWFGTSFSEGKLRVISWQTRSPVMDIVIQRLPQTLWVVGMSYIVGILIALPIGIYSAYKQYSLFDQAGTFVSMIGFSIP
PFFSGVLVIVIFSVNLGWLPSIYDTTHEVTDWASFKVQLQQMIMPVMVLALQTTAQISRFMRASMLDNLNQDYVRTARAK
GLKESVVVMVHVLRNSMIPIITVIALGVPSIFGGAIITETLFKVNGIGQLLLTALFANDLPMVMTLTFIFAILIVFFNLI
ADVLYGVLDPRIRYD

Sequences:

>Translated_335_residues
MLTYTIRRLVLAIPTLLFISIVIFLLLQLAPGDPMSQVPLTVPPEVKQLMREALGLGEPIHVQYWKWLVQFFWVEPQVLI
DHWFGTSFSEGKLRVISWQTRSPVMDIVIQRLPQTLWVVGMSYIVGILIALPIGIYSAYKQYSLFDQAGTFVSMIGFSIP
PFFSGVLVIVIFSVNLGWLPSIYDTTHEVTDWASFKVQLQQMIMPVMVLALQTTAQISRFMRASMLDNLNQDYVRTARAK
GLKESVVVMVHVLRNSMIPIITVIALGVPSIFGGAIITETLFKVNGIGQLLLTALFANDLPMVMTLTFIFAILIVFFNLI
ADVLYGVLDPRIRYD
>Mature_335_residues
MLTYTIRRLVLAIPTLLFISIVIFLLLQLAPGDPMSQVPLTVPPEVKQLMREALGLGEPIHVQYWKWLVQFFWVEPQVLI
DHWFGTSFSEGKLRVISWQTRSPVMDIVIQRLPQTLWVVGMSYIVGILIALPIGIYSAYKQYSLFDQAGTFVSMIGFSIP
PFFSGVLVIVIFSVNLGWLPSIYDTTHEVTDWASFKVQLQQMIMPVMVLALQTTAQISRFMRASMLDNLNQDYVRTARAK
GLKESVVVMVHVLRNSMIPIITVIALGVPSIFGGAIITETLFKVNGIGQLLLTALFANDLPMVMTLTFIFAILIVFFNLI
ADVLYGVLDPRIRYD

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=339, Percent_Identity=34.2182890855457, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI1789888, Length=339, Percent_Identity=34.2182890855457, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1789965, Length=357, Percent_Identity=33.8935574229692, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=31.7365269461078, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1788504, Length=386, Percent_Identity=25.9067357512953, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787761, Length=336, Percent_Identity=29.4642857142857, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1787550, Length=284, Percent_Identity=25, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37789; Mature: 37789

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTYTIRRLVLAIPTLLFISIVIFLLLQLAPGDPMSQVPLTVPPEVKQLMREALGLGEPI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
HVQYWKWLVQFFWVEPQVLIDHWFGTSFSEGKLRVISWQTRSPVMDIVIQRLPQTLWVVG
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
MSYIVGILIALPIGIYSAYKQYSLFDQAGTFVSMIGFSIPPFFSGVLVIVIFSVNLGWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
SIYDTTHEVTDWASFKVQLQQMIMPVMVLALQTTAQISRFMRASMLDNLNQDYVRTARAK
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GLKESVVVMVHVLRNSMIPIITVIALGVPSIFGGAIITETLFKVNGIGQLLLTALFANDL
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
PMVMTLTFIFAILIVFFNLIADVLYGVLDPRIRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLTYTIRRLVLAIPTLLFISIVIFLLLQLAPGDPMSQVPLTVPPEVKQLMREALGLGEPI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
HVQYWKWLVQFFWVEPQVLIDHWFGTSFSEGKLRVISWQTRSPVMDIVIQRLPQTLWVVG
HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
MSYIVGILIALPIGIYSAYKQYSLFDQAGTFVSMIGFSIPPFFSGVLVIVIFSVNLGWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
SIYDTTHEVTDWASFKVQLQQMIMPVMVLALQTTAQISRFMRASMLDNLNQDYVRTARAK
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GLKESVVVMVHVLRNSMIPIITVIALGVPSIFGGAIITETLFKVNGIGQLLLTALFANDL
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
PMVMTLTFIFAILIVFFNLIADVLYGVLDPRIRYD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]