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The map label for this gene is xp55 [H]

Identifier: 110680492

GI number: 110680492

Start: 3177368

End: 3179098

Strand: Direct

Name: xp55 [H]

Synonym: RD1_3314

Alternate gene names: 110680492

Gene position: 3177368-3179098 (Clockwise)

Preceding gene: 110680489

Following gene: 110680493

Centisome position: 76.88

GC content: 58.93

Gene sequence:

>1731_bases
ATGAAACTGAAAACATTACTGATGGGCGCAGTCGCGACCGCCAGCTTTGCCCCCGCCGTCCTTGCCGACGGGCATGAGGG
CGAACGCGGACGCGACGGGCAGCTCAATATCATTTACTGGCAAGCCCCCTCGACGCTGAACCCGTTTTTATCCGGGGGCA
CCAAGGAAAACGAAGCGGCAAGCCTCGTGCTGGAATCCCTCGCCCGGTTCAATGAAATGGGCGAGATGGTCCCTTGGCTG
GCCGAAGACATCCCGACGGTCAAAAACGGCGGCGTTGCAAAGGATCAGACCTCGATCACCTGGACATTGCGTGAGGGCCT
TGTCTGGTCCGATGGCACCGCTGTTACGGCTGATGACATCCTGTTCACTTATGAATATTGCACACACCCCGAAAGCGGTT
GCGCATCGCTGAGTTACTTTGACGGCATCAGCGCGATTGAAGCTGTCGGTGAGCGTGGTGTCAAAATCAGTTTCGACACC
CCCAAACCGTTCCCCTATACGGCCTTCGTAGGGGCAGAAGCCCCGATCCTGCAAAAAGCGCAATTTCAGGAGTGCCTTGG
TGCGCGCGCCCCCGAATGCACCGAAGCCAATTTCGGCCCCATCGGGACCGGCCCTTTCGTGGTTGAGGAATTCCGCCCCA
ATGACGTGATTACCTATGTGGCCAATGAAAACTACCGCGATGCGAGCAAACCTGCCTTTGCCCGGGTCACGCTGAAAGGT
GGCGGCGATGCGGCGGCGGCGGCGCGTTCGGTGCTGGAAACAGGCGAATTCGACTACGCCTGGAACCTGCAGCTTGCCCC
CGATGTTCTGTCGCGCATGGAAGAAGCCGGCAGGGGCACCGTGATCACCGCCTACGGCACGTCGGTCGAGCGGCTGCACC
TGAACCAGACCAATCCGGATCCATTGCTTGGCCCGGATCAACGCTCTGTCTTCATGAACGGCGAAAACGCGCATCCCTTC
CTTACGGATCCGGCGGTGGGTCAGGCGCTTTCCATGGCCATTGACCGCGCCTTGATTGATGAAATCGGATATGGCGCCGG
CGGGCAGCCGACCTGCAACGTGCTCCCCGCCCCCGAACTTTACGCCTCAACTGCCAATGATGCCTGCCTCGTACAGGACA
TTGAGGGCGCAAACGCCGTTCTCGATGCGGCAGGCTGGGTTGACACGAATGGCAATGGCGTGCGGGACAAGGACGGGGTC
GAATTGTCCATCCTGTTCCAGACATCCACCAACGCCGTGCGTCAGGACACGCAGGCCCTGATCAAGGATTGGTGGCGTCA
GATCGGTGTCGAAACCGAATTGCGCAATATCGACGCATCGGTCTTCTTTGGGGGCGATCCCGGTTCCCCTGATACGTTCC
AGAAATTCTATGCCGATGTGGAAATGTATACCAACAACTTTGCCGGGGTTGATCCCGAAGCCTATATGGGCAACTGGGTC
TGCGCCGATATCCCACGCCCGCAAACGCAGTGGCAGGGAAACAACATCCAACGGTTCTGCGACCCGGAATATGACGCTTT
GGTGCAGCAGATGTCCACCACCACCGATCTCGCGGAACGCGGCGAACTGGCAAGGAAAATGAATGACATGCTCGTGCAAA
GCTGGTCGATCATTCCGCTGATACACCGCGGCAGCCCCTCAGCACATGCCAACACCCTGGGCGGGATCAAGATGTCCGAC
TGGGACAGCGAACTGTGGAACATCGCGGATTGGTACCGCAAGGACGGCTGA

Upstream 100 bases:

>100_bases
TGCGCGCCAGCCCAAATCGCCCCCACCCGGTCGCTCAACAAAAAGGCGTCTTGAACGCATGGGAACAACCGGCATTTCGG
TGTCCAATTGGGAGAATATT

Downstream 100 bases:

>100_bases
ATGACACATGTGCAGGGCATCCGCTTTCGGCCTGCCCTGCACCCTGAACACGACCGACCCGATTGCCAGAAGGCAAGACG
GCCCGCACCAATAGCAAGAA

Product: peptide ABC transporter, periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 576

Protein sequence:

>576_residues
MKLKTLLMGAVATASFAPAVLADGHEGERGRDGQLNIIYWQAPSTLNPFLSGGTKENEAASLVLESLARFNEMGEMVPWL
AEDIPTVKNGGVAKDQTSITWTLREGLVWSDGTAVTADDILFTYEYCTHPESGCASLSYFDGISAIEAVGERGVKISFDT
PKPFPYTAFVGAEAPILQKAQFQECLGARAPECTEANFGPIGTGPFVVEEFRPNDVITYVANENYRDASKPAFARVTLKG
GGDAAAAARSVLETGEFDYAWNLQLAPDVLSRMEEAGRGTVITAYGTSVERLHLNQTNPDPLLGPDQRSVFMNGENAHPF
LTDPAVGQALSMAIDRALIDEIGYGAGGQPTCNVLPAPELYASTANDACLVQDIEGANAVLDAAGWVDTNGNGVRDKDGV
ELSILFQTSTNAVRQDTQALIKDWWRQIGVETELRNIDASVFFGGDPGSPDTFQKFYADVEMYTNNFAGVDPEAYMGNWV
CADIPRPQTQWQGNNIQRFCDPEYDALVQQMSTTTDLAERGELARKMNDMLVQSWSIIPLIHRGSPSAHANTLGGIKMSD
WDSELWNIADWYRKDG

Sequences:

>Translated_576_residues
MKLKTLLMGAVATASFAPAVLADGHEGERGRDGQLNIIYWQAPSTLNPFLSGGTKENEAASLVLESLARFNEMGEMVPWL
AEDIPTVKNGGVAKDQTSITWTLREGLVWSDGTAVTADDILFTYEYCTHPESGCASLSYFDGISAIEAVGERGVKISFDT
PKPFPYTAFVGAEAPILQKAQFQECLGARAPECTEANFGPIGTGPFVVEEFRPNDVITYVANENYRDASKPAFARVTLKG
GGDAAAAARSVLETGEFDYAWNLQLAPDVLSRMEEAGRGTVITAYGTSVERLHLNQTNPDPLLGPDQRSVFMNGENAHPF
LTDPAVGQALSMAIDRALIDEIGYGAGGQPTCNVLPAPELYASTANDACLVQDIEGANAVLDAAGWVDTNGNGVRDKDGV
ELSILFQTSTNAVRQDTQALIKDWWRQIGVETELRNIDASVFFGGDPGSPDTFQKFYADVEMYTNNFAGVDPEAYMGNWV
CADIPRPQTQWQGNNIQRFCDPEYDALVQQMSTTTDLAERGELARKMNDMLVQSWSIIPLIHRGSPSAHANTLGGIKMSD
WDSELWNIADWYRKDG
>Mature_576_residues
MKLKTLLMGAVATASFAPAVLADGHEGERGRDGQLNIIYWQAPSTLNPFLSGGTKENEAASLVLESLARFNEMGEMVPWL
AEDIPTVKNGGVAKDQTSITWTLREGLVWSDGTAVTADDILFTYEYCTHPESGCASLSYFDGISAIEAVGERGVKISFDT
PKPFPYTAFVGAEAPILQKAQFQECLGARAPECTEANFGPIGTGPFVVEEFRPNDVITYVANENYRDASKPAFARVTLKG
GGDAAAAARSVLETGEFDYAWNLQLAPDVLSRMEEAGRGTVITAYGTSVERLHLNQTNPDPLLGPDQRSVFMNGENAHPF
LTDPAVGQALSMAIDRALIDEIGYGAGGQPTCNVLPAPELYASTANDACLVQDIEGANAVLDAAGWVDTNGNGVRDKDGV
ELSILFQTSTNAVRQDTQALIKDWWRQIGVETELRNIDASVFFGGDPGSPDTFQKFYADVEMYTNNFAGVDPEAYMGNWV
CADIPRPQTQWQGNNIQRFCDPEYDALVQQMSTTTDLAERGELARKMNDMLVQSWSIIPLIHRGSPSAHANTLGGIKMSD
WDSELWNIADWYRKDG

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=535, Percent_Identity=23.9252336448598, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1789887, Length=394, Percent_Identity=25.8883248730964, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787052, Length=515, Percent_Identity=21.9417475728155, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62620; Mature: 62620

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKTLLMGAVATASFAPAVLADGHEGERGRDGQLNIIYWQAPSTLNPFLSGGTKENEAA
CCHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCHHHH
SLVLESLARFNEMGEMVPWLAEDIPTVKNGGVAKDQTSITWTLREGLVWSDGTAVTADDI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEECCCCEEEECCE
LFTYEYCTHPESGCASLSYFDGISAIEAVGERGVKISFDTPKPFPYTAFVGAEAPILQKA
EEEEHHHCCCCCCCCCHHHHCCHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHHH
QFQECLGARAPECTEANFGPIGTGPFVVEEFRPNDVITYVANENYRDASKPAFARVTLKG
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEC
GGDAAAAARSVLETGEFDYAWNLQLAPDVLSRMEEAGRGTVITAYGTSVERLHLNQTNPD
CCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCC
PLLGPDQRSVFMNGENAHPFLTDPAVGQALSMAIDRALIDEIGYGAGGQPTCNVLPAPEL
CCCCCCCCEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
YASTANDACLVQDIEGANAVLDAAGWVDTNGNGVRDKDGVELSILFQTSTNAVRQDTQAL
HHCCCCCEEEEEECCCCCEEEECCCCEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
IKDWWRQIGVETELRNIDASVFFGGDPGSPDTFQKFYADVEMYTNNFAGVDPEAYMGNWV
HHHHHHHCCCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCEE
CADIPRPQTQWQGNNIQRFCDPEYDALVQQMSTTTDLAERGELARKMNDMLVQSWSIIPL
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IHRGSPSAHANTLGGIKMSDWDSELWNIADWYRKDG
EECCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLKTLLMGAVATASFAPAVLADGHEGERGRDGQLNIIYWQAPSTLNPFLSGGTKENEAA
CCHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCHHHH
SLVLESLARFNEMGEMVPWLAEDIPTVKNGGVAKDQTSITWTLREGLVWSDGTAVTADDI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEECCCCEEEECCE
LFTYEYCTHPESGCASLSYFDGISAIEAVGERGVKISFDTPKPFPYTAFVGAEAPILQKA
EEEEHHHCCCCCCCCCHHHHCCHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCHHHHH
QFQECLGARAPECTEANFGPIGTGPFVVEEFRPNDVITYVANENYRDASKPAFARVTLKG
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEC
GGDAAAAARSVLETGEFDYAWNLQLAPDVLSRMEEAGRGTVITAYGTSVERLHLNQTNPD
CCCHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCC
PLLGPDQRSVFMNGENAHPFLTDPAVGQALSMAIDRALIDEIGYGAGGQPTCNVLPAPEL
CCCCCCCCEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
YASTANDACLVQDIEGANAVLDAAGWVDTNGNGVRDKDGVELSILFQTSTNAVRQDTQAL
HHCCCCCEEEEEECCCCCEEEECCCCEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
IKDWWRQIGVETELRNIDASVFFGGDPGSPDTFQKFYADVEMYTNNFAGVDPEAYMGNWV
HHHHHHHCCCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCEE
CADIPRPQTQWQGNNIQRFCDPEYDALVQQMSTTTDLAERGELARKMNDMLVQSWSIIPL
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IHRGSPSAHANTLGGIKMSDWDSELWNIADWYRKDG
EECCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]