| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is trpE [H]
Identifier: 110680387
GI number: 110680387
Start: 3069265
End: 3070776
Strand: Direct
Name: trpE [H]
Synonym: RD1_3205
Alternate gene names: 110680387
Gene position: 3069265-3070776 (Clockwise)
Preceding gene: 110680386
Following gene: 110680388
Centisome position: 74.26
GC content: 62.43
Gene sequence:
>1512_bases ATGGCACTCACACCTGATTTCGATGCGTTTGAGCAGGCCTACAGCACAGGGCTGAACCAGATCGTATACACCAGACTGGC GGCCGACCTCGACACGCCGGTATCTCTGATGCTCAAGCTGACGGGGGCGCAGAAAGATGCCTTTGTGCTGGAATCCGTGA CCGGGGGCGAGGTGCGCGGGCGCTATTCGATCATCGGGATGAAACCCGATCTGATCTGGCGCTGTCAGGGCAAGACCAGC GAAATCAACCGCGCCGCGCGCTATGATGCCGATGCGTTTGAGCCGCTGGAGGGCAACCCGCTGGACCGGCTGCGCGATCT GATCGCGGAGAGCAAGATCGACCTGCCGCTTGATTTGCCGCAGGCTGCTGCGGGTCTGTTCGGCTATCTCGGCTATGACA TGGTGCGGCTGGTCGAACATCTGCCCGACATCAACCCCGACCCGCTGGGCCTGCCTGACGCGATCATGCTGCGCCCTTCG GTGATTGCGGTGCTGGACGGCGTCAAGGGCGAGGTCACGGTAGTATCGCCTGCTTGGGTGTCTGACGGACAAACCGCCCG CGCGGCTTATGCGCAGGCCGCCGAGCGTGTCATGGACGCCGTGCGCGATCTGGAGCGCGCGATGCCCATGGCCACCCGCG ATCTGGGTGACGCGGATGCCCCCGGCGCGCCGGTCAGCAACTTTACCCACGAAGGCTACAAGGCCGCCGTGGAAAAGGCG CGCGACTACATCTGTGCGGGCGATATTTTTCAGGTGGTCCCGGCACAGCGCTGGACGCAGGATTTCGCGCAGGATCCTTT CGCGCTTTATCGTAGTTTGCGGCGCACGAACCCCTCGCCTTTCATGTTCTATTTCAATTTTGGCGGCTTTCAGGTGATCG GGGCCAGCCCCGAAATTCTCGTGCGCGTCTTTGGCAATGAGGTCACGATCCGCCCCATCGCAGGCACCCGCCCGCGCGGC AAGACACCGCAAGAGGACAACGCGCTCGAAGCGGATCTGCTGGCAGACAAGAAAGAGCTGGCGGAGCATCTGATGCTGCT TGATCTGGGCCGCAATGACGTGGGCCGCGTGGCCAAGATCGGCACCGTCCGCCCCACCGAAGAGTTCATCGTCGAGCGCT ACAGCCACGTGATGCATATTGTGTCCAATGTGGTGGGTGAGTTGCGGGAGGACGCCGATGCGCTGGATGCGTTCTTCGCA GGGATGCCCGCGGGCACTGTGTCGGGGGCACCCAAGGTGCGCGCGATGGAGATCATTGACGAGTTGGAGCCTGAAAAACG CGGTGTCTATGGCGGCGGCGTCGGCTATTTCAGCGCCGGTGGCGATATGGACATGTGCATCGCCCTGCGCACCGCCGTGG TGCAGGACCAAAAGCTATACATTCAGGCCGGTGGCGGCGTTGTCTATGACAGCGACCCCGAGGCGGAATATCAGGAAACG GTTCACAAATCGAACGCGATCCGACGCGCGGCGGCAGATGCTGCACGCTTCAGCGGTGAAGGCAACCGTTAG
Upstream 100 bases:
>100_bases CATCTTCGAGGTTTTCGCAAATGATGTCGTCTTGCGCGCAGACCCGCAGATAAACCAACAGGCGCTGCAAGCGGTGCATG TGAATTTCCCCTGATCCGCC
Downstream 100 bases:
>100_bases GCCATGGCCCGCGCGCCATTTGAAATCGCGGGGAAAACGATCCTTGCCGGGACCTCGCAAACCGTTCACTTGCCGGTCTC GATCCTGCCTGATCACACGC
Product: anthranilate synthase component I
Products: NA
Alternate protein names: Anthranilate synthase component I [H]
Number of amino acids: Translated: 503; Mature: 502
Protein sequence:
>503_residues MALTPDFDAFEQAYSTGLNQIVYTRLAADLDTPVSLMLKLTGAQKDAFVLESVTGGEVRGRYSIIGMKPDLIWRCQGKTS EINRAARYDADAFEPLEGNPLDRLRDLIAESKIDLPLDLPQAAAGLFGYLGYDMVRLVEHLPDINPDPLGLPDAIMLRPS VIAVLDGVKGEVTVVSPAWVSDGQTARAAYAQAAERVMDAVRDLERAMPMATRDLGDADAPGAPVSNFTHEGYKAAVEKA RDYICAGDIFQVVPAQRWTQDFAQDPFALYRSLRRTNPSPFMFYFNFGGFQVIGASPEILVRVFGNEVTIRPIAGTRPRG KTPQEDNALEADLLADKKELAEHLMLLDLGRNDVGRVAKIGTVRPTEEFIVERYSHVMHIVSNVVGELREDADALDAFFA GMPAGTVSGAPKVRAMEIIDELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPEAEYQET VHKSNAIRRAAADAARFSGEGNR
Sequences:
>Translated_503_residues MALTPDFDAFEQAYSTGLNQIVYTRLAADLDTPVSLMLKLTGAQKDAFVLESVTGGEVRGRYSIIGMKPDLIWRCQGKTS EINRAARYDADAFEPLEGNPLDRLRDLIAESKIDLPLDLPQAAAGLFGYLGYDMVRLVEHLPDINPDPLGLPDAIMLRPS VIAVLDGVKGEVTVVSPAWVSDGQTARAAYAQAAERVMDAVRDLERAMPMATRDLGDADAPGAPVSNFTHEGYKAAVEKA RDYICAGDIFQVVPAQRWTQDFAQDPFALYRSLRRTNPSPFMFYFNFGGFQVIGASPEILVRVFGNEVTIRPIAGTRPRG KTPQEDNALEADLLADKKELAEHLMLLDLGRNDVGRVAKIGTVRPTEEFIVERYSHVMHIVSNVVGELREDADALDAFFA GMPAGTVSGAPKVRAMEIIDELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPEAEYQET VHKSNAIRRAAADAARFSGEGNR >Mature_502_residues ALTPDFDAFEQAYSTGLNQIVYTRLAADLDTPVSLMLKLTGAQKDAFVLESVTGGEVRGRYSIIGMKPDLIWRCQGKTSE INRAARYDADAFEPLEGNPLDRLRDLIAESKIDLPLDLPQAAAGLFGYLGYDMVRLVEHLPDINPDPLGLPDAIMLRPSV IAVLDGVKGEVTVVSPAWVSDGQTARAAYAQAAERVMDAVRDLERAMPMATRDLGDADAPGAPVSNFTHEGYKAAVEKAR DYICAGDIFQVVPAQRWTQDFAQDPFALYRSLRRTNPSPFMFYFNFGGFQVIGASPEILVRVFGNEVTIRPIAGTRPRGK TPQEDNALEADLLADKKELAEHLMLLDLGRNDVGRVAKIGTVRPTEEFIVERYSHVMHIVSNVVGELREDADALDAFFAG MPAGTVSGAPKVRAMEIIDELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPEAEYQETV HKSNAIRRAAADAARFSGEGNR
Specific function: Tryptophan biosynthesis; first step. [C]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate synthase component I family [H]
Homologues:
Organism=Escherichia coli, GI1787518, Length=376, Percent_Identity=39.0957446808511, Blast_Score=249, Evalue=4e-67, Organism=Escherichia coli, GI1788114, Length=445, Percent_Identity=33.2584269662921, Blast_Score=231, Evalue=7e-62, Organism=Escherichia coli, GI87082077, Length=261, Percent_Identity=27.9693486590038, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786809, Length=227, Percent_Identity=28.1938325991189, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6320935, Length=500, Percent_Identity=38.4, Blast_Score=287, Evalue=2e-78, Organism=Saccharomyces cerevisiae, GI6324361, Length=287, Percent_Identity=27.1777003484321, Blast_Score=97, Evalue=6e-21,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR005256 - InterPro: IPR015890 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =4.1.3.27 [H]
Molecular weight: Translated: 54827; Mature: 54696
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTPDFDAFEQAYSTGLNQIVYTRLAADLDTPVSLMLKLTGAQKDAFVLESVTGGEVRG CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCC RYSIIGMKPDLIWRCQGKTSEINRAARYDADAFEPLEGNPLDRLRDLIAESKIDLPLDLP EEEEEECCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH QAAAGLFGYLGYDMVRLVEHLPDINPDPLGLPDAIMLRPSVIAVLDGVKGEVTVVSPAWV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHCCCCCCEEEECCCCC SDGQTARAAYAQAAERVMDAVRDLERAMPMATRDLGDADAPGAPVSNFTHEGYKAAVEKA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH RDYICAGDIFQVVPAQRWTQDFAQDPFALYRSLRRTNPSPFMFYFNFGGFQVIGASPEIL HHCEECCHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCEEEECCCHHEE VRVFGNEVTIRPIAGTRPRGKTPQEDNALEADLLADKKELAEHLMLLDLGRNDVGRVAKI EEEECCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHC GTVRPTEEFIVERYSHVMHIVSNVVGELREDADALDAFFAGMPAGTVSGAPKVRAMEIID CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPEAEYQET HCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCHHHHHH VHKSNAIRRAAADAARFSGEGNR HHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ALTPDFDAFEQAYSTGLNQIVYTRLAADLDTPVSLMLKLTGAQKDAFVLESVTGGEVRG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCC RYSIIGMKPDLIWRCQGKTSEINRAARYDADAFEPLEGNPLDRLRDLIAESKIDLPLDLP EEEEEECCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH QAAAGLFGYLGYDMVRLVEHLPDINPDPLGLPDAIMLRPSVIAVLDGVKGEVTVVSPAWV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHCCCCCCEEEECCCCC SDGQTARAAYAQAAERVMDAVRDLERAMPMATRDLGDADAPGAPVSNFTHEGYKAAVEKA CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH RDYICAGDIFQVVPAQRWTQDFAQDPFALYRSLRRTNPSPFMFYFNFGGFQVIGASPEIL HHCEECCHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCEEEECCCHHEE VRVFGNEVTIRPIAGTRPRGKTPQEDNALEADLLADKKELAEHLMLLDLGRNDVGRVAKI EEEECCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHC GTVRPTEEFIVERYSHVMHIVSNVVGELREDADALDAFFAGMPAGTVSGAPKVRAMEIID CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH ELEPEKRGVYGGGVGYFSAGGDMDMCIALRTAVVQDQKLYIQAGGGVVYDSDPEAEYQET HCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCHHHHHH VHKSNAIRRAAADAARFSGEGNR HHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA