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The map label for this gene is 110680304

Identifier: 110680304

GI number: 110680304

Start: 2993420

End: 2993887

Strand: Reverse

Name: 110680304

Synonym: RD1_3117

Alternate gene names: NA

Gene position: 2993887-2993420 (Counterclockwise)

Preceding gene: 110680305

Following gene: 110680301

Centisome position: 72.44

GC content: 61.75

Gene sequence:

>468_bases
ATGGGCAAGGCCATGTTCTATCATTTGACGCGGCGTCCCATGGAAGACACGCTGATGATGCTGCTTGGCAAGGCGACGGG
TGCAGGCTGGCGCGTGGTCGTGCGCGGCACGCGGCCTGACCGGATGGCATGGCTGGATGAAAAACTGTGGCAGGGGGCGG
ATGACAGCTTCCTGCCGCATGGTCTGGCGGGTGGTGCGCATGATGCGCGTCAGCCAATTCTGCTGAGCACCACGTCGGAC
ATTCCGAATGCGGCCACCTGCGTCATGTCGGTTGACGGAGCAGATGTGGCAGCGGATGAGGTCGCACAATTGGACCGCGT
TTGCGTGCTGTTTGATGGCAACGACGCGCAGGCGCTGGATGTGGCGCGCGGTCAGTGGAGCGCACTCAAAAAGGCCGGGG
CCGCTGCGGAATACTGGTCCGAAGACAGCGGCTCCTGGCAGAAAAAAGCTGAAACCAAAGCAGGTTAG

Upstream 100 bases:

>100_bases
TCAAATCCGAAACGGATTATGCGCCCAAAGGGGCCACGGGCTGGGGCGTGCGCGCGCTCGACCGTCTGGTCGCGGATCGT
TTCGAAGGAGAATAGCGCCA

Downstream 100 bases:

>100_bases
CGCATCAGCGTCAGCGTGTTGTCCGCAATCTGGATTTTGCCCCATTTCTGCAAATAGGTCATGCCGAGCAGCGAGTTGTT
CATCTCGCCCTCATTTACTA

Product: DNA polymerase III subunit chi

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Chi Subunit HolC; DNA Polymerase III Chi Subunit; DNA Polymerase III Subunit Chi HolC; DNA Polymerase III Chi Subunit Superfamily; DNA Polymerase III Chi Subunit Holc; DNA Polymerase III

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGLAGGAHDARQPILLSTTSD
IPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQALDVARGQWSALKKAGAAAEYWSEDSGSWQKKAETKAG

Sequences:

>Translated_155_residues
MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGLAGGAHDARQPILLSTTSD
IPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQALDVARGQWSALKKAGAAAEYWSEDSGSWQKKAETKAG
>Mature_154_residues
GKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPHGLAGGAHDARQPILLSTTSDI
PNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQALDVARGQWSALKKAGAAAEYWSEDSGSWQKKAETKAG

Specific function: Unknown

COG id: COG2927

COG function: function code L; DNA polymerase III, chi subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 16723; Mature: 16592

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH
CCCCEEEHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
GLAGGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQALD
CCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCEEH
VARGQWSALKKAGAAAEYWSEDSGSWQKKAETKAG
HCCCHHHHHHHCCCHHHHCCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
GKAMFYHLTRRPMEDTLMMLLGKATGAGWRVVVRGTRPDRMAWLDEKLWQGADDSFLPH
CCCEEEHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
GLAGGAHDARQPILLSTTSDIPNAATCVMSVDGADVAADEVAQLDRVCVLFDGNDAQALD
CCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCEEH
VARGQWSALKKAGAAAEYWSEDSGSWQKKAETKAG
HCCCHHHHHHHCCCHHHHCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA