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The map label for this gene is 110680303

Identifier: 110680303

GI number: 110680303

Start: 2992842

End: 2993423

Strand: Direct

Name: 110680303

Synonym: RD1_3116

Alternate gene names: NA

Gene position: 2992842-2993423 (Clockwise)

Preceding gene: 110680302

Following gene: 110680306

Centisome position: 72.41

GC content: 59.62

Gene sequence:

>582_bases
GTGGACAGTTTCGACACCGGGCAGCTTATCTACCTGATCCTGCTGGGCCTGATGGTCAGTGGATGGTTTTTCATGCAAGG
CCGGGGGTCGTGGAATAAAACCCTCCAACAGGCCGCCGCATGGGCGTTTATTTTCGGCGGTGCCGTCGTCGCCTATGGTC
TGTGGGATGATATCTCGCGCACCGTCCTGCCGCAGCAATCGGTCTTTGCAGATGAAAACCGGATCGTCGTGCCGCGCAGC
CCGAACGGGCATTACTACATCGAGGCAGAGGTCAACGGCGCCCCTGTGCGTTTCGTTCTGGATACCGGCGCGACATCACT
GGTGCTGACCCAGAAAGATGCCGAGGCTGCTGGCCTGCTGCGCGATGAGCTGACCTATTACGGCCGCGCCATGACCGCCA
ACGGCGAAGTGCGCACCGCCCCTGTCCGGCTCGACACCATGAAGCTGGGGCATGTCACCGACCGGGATGTCGTGGCGGTA
GTAAATGAGGGCGAGATGAACAACTCGCTGCTCGGCATGACCTATTTGCAGAAATGGGGCAAAATCCAGATTGCGGACAA
CACGCTGACGCTGATGCGCTAA

Upstream 100 bases:

>100_bases
CGTGCTGGACGGGCTGGCAGCCTTTGGTTTTGCGCCCGGCATGGGCTGACAATTCCGAATTGCACCATATATCTAACCCG
TAAGTGATGGGAGAGTTTCA

Downstream 100 bases:

>100_bases
CCTGCTTTGGTTTCAGCTTTTTTCTGCCAGGAGCCGCTGTCTTCGGACCAGTATTCCGCAGCGGCCCCGGCCTTTTTGAG
TGCGCTCCACTGACCGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MDSFDTGQLIYLILLGLMVSGWFFMQGRGSWNKTLQQAAAWAFIFGGAVVAYGLWDDISRTVLPQQSVFADENRIVVPRS
PNGHYYIEAEVNGAPVRFVLDTGATSLVLTQKDAEAAGLLRDELTYYGRAMTANGEVRTAPVRLDTMKLGHVTDRDVVAV
VNEGEMNNSLLGMTYLQKWGKIQIADNTLTLMR

Sequences:

>Translated_193_residues
MDSFDTGQLIYLILLGLMVSGWFFMQGRGSWNKTLQQAAAWAFIFGGAVVAYGLWDDISRTVLPQQSVFADENRIVVPRS
PNGHYYIEAEVNGAPVRFVLDTGATSLVLTQKDAEAAGLLRDELTYYGRAMTANGEVRTAPVRLDTMKLGHVTDRDVVAV
VNEGEMNNSLLGMTYLQKWGKIQIADNTLTLMR
>Mature_193_residues
MDSFDTGQLIYLILLGLMVSGWFFMQGRGSWNKTLQQAAAWAFIFGGAVVAYGLWDDISRTVLPQQSVFADENRIVVPRS
PNGHYYIEAEVNGAPVRFVLDTGATSLVLTQKDAEAAGLLRDELTYYGRAMTANGEVRTAPVRLDTMKLGHVTDRDVVAV
VNEGEMNNSLLGMTYLQKWGKIQIADNTLTLMR

Specific function: Unknown

COG id: COG3577

COG function: function code R; Predicted aspartyl protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011969
- InterPro:   IPR021109
- InterPro:   IPR001969 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21369; Mature: 21369

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFDTGQLIYLILLGLMVSGWFFMQGRGSWNKTLQQAAAWAFIFGGAVVAYGLWDDISR
CCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCHHEEEECHHHHHH
TVLPQQSVFADENRIVVPRSPNGHYYIEAEVNGAPVRFVLDTGATSLVLTQKDAEAAGLL
HCCCCHHHCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCHHHHHH
RDELTYYGRAMTANGEVRTAPVRLDTMKLGHVTDRDVVAVVNEGEMNNSLLGMTYLQKWG
HHHHHHHCEEEECCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEHHHHHHHCC
KIQIADNTLTLMR
EEEEECCEEEEEC
>Mature Secondary Structure
MDSFDTGQLIYLILLGLMVSGWFFMQGRGSWNKTLQQAAAWAFIFGGAVVAYGLWDDISR
CCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHCCHHEEEECHHHHHH
TVLPQQSVFADENRIVVPRSPNGHYYIEAEVNGAPVRFVLDTGATSLVLTQKDAEAAGLL
HCCCCHHHCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCHHHHHH
RDELTYYGRAMTANGEVRTAPVRLDTMKLGHVTDRDVVAVVNEGEMNNSLLGMTYLQKWG
HHHHHHHCEEEECCCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCEEHHHHHHHCC
KIQIADNTLTLMR
EEEEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1917841 [H]