Click here to switch to the map view.

The map label for this gene is ulaR [H]

Identifier: 110680271

GI number: 110680271

Start: 2953269

End: 2954081

Strand: Reverse

Name: ulaR [H]

Synonym: RD1_3082

Alternate gene names: 110680271

Gene position: 2954081-2953269 (Counterclockwise)

Preceding gene: 110680276

Following gene: 110680270

Centisome position: 71.47

GC content: 59.04

Gene sequence:

>813_bases
ATGCACGAAAAAGACCGTCATCGCGTAATCCTATCAGCCGTTCAGGACCGGTCTCTTGTGACGGTCGTGGATTTGTGCAC
GCTGACCGGCGCATCCGAGGCAACGGTGCGGCGCGATATCAACACGCTGGATGCGCAAGGGCGCTTGCGTCGTGTGCGCG
GCGGGGCCGAGGCGCTGGCGACAAAGCCGTTTGTGGGCCTTGCGGGGCGTCCGTTTTCGGTGAACGAAACCTTGAACAGC
GCTGAAAAGCAGGCCATCGCGGCGGCGGCGGTTGATCTGTGTGAGGATGGTGAGCCGATCATCATCAACGGTGGGACGAC
CACCTTCCAGATGGTCCACCCGCTGGCCTCGCGTCGGATGCAGGTGTTCACCAACTCCTTTCCCATCGCCGAGCATCTGT
TGAAGAATTCCACCAATACTGTGATGCTGTCTGGCGGGATCATCTACCGCGAACAGAACATCATCCTGTCGCCTTTTGAG
AACGATGTGACGCGCAACTTCTATGCCAAACGGATGTTTATGGGGGCCGCCGGCATCGGCCCGCTGGGCTTGATGGAGCA
GGACCCACTGCTCATTCAGGCCGAGCAGAAACTGATCGGGCAGGCGGATGAATTGATCGTTCTGGTGGACAGTACGAAGT
TTGAAAACCGCTCCAGCCTCGTGCTGTGTCCGTTGGAGCGGATCGATACGCTTATCACCGATGACCGCATGGATGATCGC
ACGGCAAACATGCTGGACGCGGCGGATGTCACATTGATCGTTGTTCCGTCCGGGATCGCGCAGAAAGACGGTGTGGCGCA
GTTGCCCGCCTGA

Upstream 100 bases:

>100_bases
CAATCAATCATGCTGCGGTGCAGAGTGATTGATTATGACAAATATTGATTGACACATCGCTGCGATTCGCGTCAGCTTGA
CGGCGAGCAAAGGGGCATCC

Downstream 100 bases:

>100_bases
TGTAACCACTCCAGGGAGGAAACCATGAGTGTACTTAAGAAACTAGCAGCATCCGTTGCATTGGCAGGAACGATGGTCGC
AAGCCCCGCGCTGGCAGAGG

Product: DeoR family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MHEKDRHRVILSAVQDRSLVTVVDLCTLTGASEATVRRDINTLDAQGRLRRVRGGAEALATKPFVGLAGRPFSVNETLNS
AEKQAIAAAAVDLCEDGEPIIINGGTTTFQMVHPLASRRMQVFTNSFPIAEHLLKNSTNTVMLSGGIIYREQNIILSPFE
NDVTRNFYAKRMFMGAAGIGPLGLMEQDPLLIQAEQKLIGQADELIVLVDSTKFENRSSLVLCPLERIDTLITDDRMDDR
TANMLDAADVTLIVVPSGIAQKDGVAQLPA

Sequences:

>Translated_270_residues
MHEKDRHRVILSAVQDRSLVTVVDLCTLTGASEATVRRDINTLDAQGRLRRVRGGAEALATKPFVGLAGRPFSVNETLNS
AEKQAIAAAAVDLCEDGEPIIINGGTTTFQMVHPLASRRMQVFTNSFPIAEHLLKNSTNTVMLSGGIIYREQNIILSPFE
NDVTRNFYAKRMFMGAAGIGPLGLMEQDPLLIQAEQKLIGQADELIVLVDSTKFENRSSLVLCPLERIDTLITDDRMDDR
TANMLDAADVTLIVVPSGIAQKDGVAQLPA
>Mature_270_residues
MHEKDRHRVILSAVQDRSLVTVVDLCTLTGASEATVRRDINTLDAQGRLRRVRGGAEALATKPFVGLAGRPFSVNETLNS
AEKQAIAAAAVDLCEDGEPIIINGGTTTFQMVHPLASRRMQVFTNSFPIAEHLLKNSTNTVMLSGGIIYREQNIILSPFE
NDVTRNFYAKRMFMGAAGIGPLGLMEQDPLLIQAEQKLIGQADELIVLVDSTKFENRSSLVLCPLERIDTLITDDRMDDR
TANMLDAADVTLIVVPSGIAQKDGVAQLPA

Specific function: Represses ulaG and the ulaABCDEF operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790635, Length=258, Percent_Identity=34.1085271317829, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=25.9842519685039, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787540, Length=253, Percent_Identity=31.2252964426877, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789059, Length=259, Percent_Identity=27.7992277992278, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789519, Length=257, Percent_Identity=29.5719844357977, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082344, Length=232, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=26.1802575107296, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788069, Length=239, Percent_Identity=27.1966527196653, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789829, Length=236, Percent_Identity=24.5762711864407, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790753, Length=258, Percent_Identity=24.031007751938, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29399; Mature: 29399

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEKDRHRVILSAVQDRSLVTVVDLCTLTGASEATVRRDINTLDAQGRLRRVRGGAEALA
CCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHCCHHCCCCHHHHHHCCCHHHHH
TKPFVGLAGRPFSVNETLNSAEKQAIAAAAVDLCEDGEPIIINGGTTTFQMVHPLASRRM
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHH
QVFTNSFPIAEHLLKNSTNTVMLSGGIIYREQNIILSPFENDVTRNFYAKRMFMGAAGIG
HHHHCCCCHHHHHHCCCCCEEEEECCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCC
PLGLMEQDPLLIQAEQKLIGQADELIVLVDSTKFENRSSLVLCPLERIDTLITDDRMDDR
CCCCCCCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCH
TANMLDAADVTLIVVPSGIAQKDGVAQLPA
HHHHCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MHEKDRHRVILSAVQDRSLVTVVDLCTLTGASEATVRRDINTLDAQGRLRRVRGGAEALA
CCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCHHHHHHCCHHCCCCHHHHHHCCCHHHHH
TKPFVGLAGRPFSVNETLNSAEKQAIAAAAVDLCEDGEPIIINGGTTTFQMVHPLASRRM
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHH
QVFTNSFPIAEHLLKNSTNTVMLSGGIIYREQNIILSPFENDVTRNFYAKRMFMGAAGIG
HHHHCCCCHHHHHHCCCCCEEEEECCEEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCC
PLGLMEQDPLLIQAEQKLIGQADELIVLVDSTKFENRSSLVLCPLERIDTLITDDRMDDR
CCCCCCCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCH
TANMLDAADVTLIVVPSGIAQKDGVAQLPA
HHHHCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA